Pre_GI: BLASTP Hits

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Query: NC_004129:5204500:5219905 Pseudomonas fluorescens Pf-5, complete genome

Start: 5219905, End: 5220414, Length: 510

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009921:465683:482764482764483234471Frankia sp. EAN1pec, complete genome67-dimethyl-8-ribityllumazine synthase3e-33140
NC_004557:691944:691944691944692405462Clostridium tetani E88, complete genomeriboflavin synthase subunit beta2e-1271.2
NC_020181:2714559:275448027544802754950471Enterobacter aerogenes EA1509E, complete genome6,7-dimethyl-8-ribityllumazine synthase3e-1271.2
NC_018704:896209:917486917486917947462Amphibacillus xylanus NBRC 15112, complete genome6,7-dimethyl-8-ribityllumazine synthase1e-1168.9
NC_001263:132288:156916156916157383468Deinococcus radiodurans R1 chromosome 1, complete sequenceriboflavin synthase, beta subunit2e-1168.9
NC_015731:169989:169989169989170471483Nitrosomonas sp. Is79A3 chromosome, complete genome6,7-dimethyl-8-ribityllumazine synthase4e-1167.4
NC_014657:473479:490831490831491298468Caldicellulosiruptor owensensis OL chromosome, complete genome6,7-dimethyl-8-ribityllumazine synthase7e-1166.6
NC_013450:1825010:184757018475701848034465Staphylococcus aureus subsp. aureus ED98, complete genome6,7-dimethyl-8-ribityllumazine synthase9e-1166.2
NC_009632:1927372:194796319479631948427465Staphylococcus aureus subsp. aureus JH1 chromosome, complete6,7-dimethyl-8-ribityllumazine synthase9e-1166.2
NC_002758:1880323:190276019027601903224465Staphylococcus aureus subsp. aureus Mu50, complete genomelumazine synthase9e-1166.2
NC_003923:1841500:186277418627741863238465Staphylococcus aureus subsp. aureus MW2, complete genome6,7-dimethyl-8-ribityllumazine synthase9e-1166.2
NC_019940:203718:221170221170221637468Thioflavicoccus mobilis 8321 chromosome, complete genome6,7-dimethyl-8-ribityllumazine synthase2e-1065.5
NC_007622:1751500:177177117717711772235465Staphylococcus aureus RF122, complete genome6,7-dimethyl-8-ribityllumazine synthase1e-1065.5
NC_016928:1843597:186626918662691866733465Staphylococcus aureus subsp. aureus M013 chromosome, complete6,7-dimethyl-8-ribityllumazine synthase1e-1065.5
NC_017351:1869287:189149018914901891954465Staphylococcus aureus subsp. aureus 11819-97 chromosome, complete6,7-dimethyl-8-ribityllumazine synthase1e-1065.5
NC_014972:847099:850846850846851313468Desulfobulbus propionicus DSM 2032 chromosome, complete genome6,7-dimethyl-8-ribityllumazine synthase2e-1064.7
NC_013158:2046185:204618520461852046661477Halorhabdus utahensis DSM 12940, complete genome6,7-dimethyl-8-ribityllumazine synthase3e-1064.7
NC_015958:11511:275922759228056465Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genome6,7-dimethyl-8-ribityllumazine synthase3e-1064.7
NC_009633:1058000:106846810684681068929462Alkaliphilus metalliredigens QYMF chromosome, complete genome6,7-dimethyl-8-ribityllumazine synthase5e-1063.9
NC_007510:973828:980276980276980794519Burkholderia sp. 383 chromosome 1, complete sequenceriboflavin synthase subunit beta5e-1063.5
NC_012724:829830:852876852876853388513Burkholderia glumae BGR1 chromosome 1, complete genome6,7-dimethyl-8-ribityllumazine synthase1e-0962.8
NC_010610:908452:907989907989908459471Lactobacillus fermentum IFO 3956, complete genomeriboflavin synthase beta subunit1e-0962.4
NC_002952:1917999:194020919402091940673465Staphylococcus aureus subsp. aureus MRSA252, complete genome6,7-dimethyl-8-ribityllumazine synthase1e-0962.4
NC_016941:1774000:179475017947501795211462Staphylococcus aureus subsp. aureus MSHR1132, complete genome6,7-dimethyl-8-ribityllumazine synthase1e-0962.4
NC_014828:637523:661197661197661664468Ethanoligenens harbinense YUAN-3 chromosome, complete genome6,7-dimethyl-8-ribityllumazine synthase2e-0962
NC_015519:1888917:191121019112101911680471Tepidanaerobacter sp. Re1 chromosome, complete genome6,7-dimethyl-8-ribityllumazine synthase2e-0962
NC_014614:478578:485726485726486187462Clostridium sticklandii, complete genomeriboflavin synthase beta chain2e-0961.6
NC_014727:2010000:202279320227932023257465Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,6,7-dimethyl-8-ribityllumazine synthase3e-0961.2
NC_008340:420126:423061423061423531471Alkalilimnicola ehrlichei MLHE-1, complete genomeRiboflavin synthase4e-0960.8
NC_008781:3056407:307382030738203074284465Polaromonas naphthalenivorans CJ2, complete genomeRiboflavin synthase6e-0960.1
NC_014330:1541874:155466215546621555132471Brachyspira pilosicoli 95/1000 chromosome, complete genomeriboflavin synthase subunit beta7e-0960.1
NC_018607:2578433:258291025829102583380471Brachyspira pilosicoli B2904 chromosome, complete genomeriboflavin synthase subunit beta7e-0960.1
NC_018604:233769:246115246115246585471Brachyspira pilosicoli WesB complete genomeriboflavin synthase subunit beta7e-0960.1
NC_016148:951446:957531957531958022492Thermovirga lienii DSM 17291 chromosome, complete genome6,7-dimethyl-8-ribityllumazine synthase1e-0858.9
NC_018691:896464:922020922020922490471Alcanivorax dieselolei B5 chromosome, complete genome6,7-dimethyl-8-ribityllumazine synthase 22e-0858.9
NC_012856:737170:738893738893739393501Ralstonia pickettii 12D chromosome 1, complete genome6,7-dimethyl-8-ribityllumazine synthase3e-0857.8
NC_010682:701912:702407702407702907501Ralstonia pickettii 12J chromosome 1, complete sequence6,7-dimethyl-8-ribityllumazine synthase3e-0857.8
NC_004461:1465397:149047014904701490931462Staphylococcus epidermidis ATCC 12228, complete genome6,7-dimethyl-8-ribityllumazine synthase7e-0856.6
NC_002976:1361364:138643613864361386897462Staphylococcus epidermidis RP62A, complete genomeriboflavin synthase, beta subunit7e-0856.6
NC_004193:3325612:334625533462553346740486Oceanobacillus iheyensis HTE831, complete genomeriboflavin synthase beta chain9e-0856.2
NC_015185:875324:888092888092888553462Desulfurobacterium thermolithotrophum DSM 11699 chromosome,6,7-dimethyl-8-ribityllumazine synthase9e-0856.2
NC_014976:403919:404944404944405408465Bacillus subtilis BSn5 chromosome, complete genome6,7-dimethyl-8-ribityllumazine synthase1e-0755.8
NC_017195:2273216:227321622732162273680465Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, complete6,7-dimethyl-8-ribityllumazine synthase1e-0755.8
NC_015873:1901939:191814219181421918606465Megasphaera elsdenii DSM 20460, complete genome62e-0755.5
NC_014761:1715377:173053217305321730984453Oceanithermus profundus DSM 14977 chromosome, complete genome6,7-dimethyl-8-ribityllumazine synthase3e-0754.7
NC_015732:191554:191554191554192021468Spirochaeta caldaria DSM 7334 chromosome, complete genome6,7-dimethyl-8-ribityllumazine synthase6e-0753.5
NC_014532:3036109:304188030418803042377498Halomonas elongata DSM 2581, complete genomeriboflavin synthase subunit beta7e-0753.1
NC_014643:1986440:201418120141812014654474Rothia dentocariosa ATCC 17931 chromosome, complete genome6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase beta chain)7e-0753.1
NC_016593:2370000:237106623710662371530465Geobacillus thermoleovorans CCB_US3_UF5 chromosome, complete6,7-dimethyl-8-ribityllumazine synthase1e-0652.8
NC_013410:3358008:337813533781353378602468Fibrobacter succinogenes subsp. succinogenes S85 chromosome,6,7-dimethyl-8-ribityllumazine synthase1e-0652.4
NC_011999:1567818:157181015718101572274465Macrococcus caseolyticus JCSC5402, complete genome6,7-dimethyl-8-ribityllumazine synthase2e-0652
NC_018870:1417851:142298614229861423489504Thermacetogenium phaeum DSM 12270 chromosome, complete genome6,7-dimethyl-8-ribityllumazine synthase RibH2e-0651.6
NC_002950:1511955:151462715146271515112486Porphyromonas gingivalis W83, complete genomeriboflavin synthase subunit beta3e-0651.2
NC_014410:8694:247122471225179468Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,6,7-dimethyl-8-ribityllumazine synthase4e-0650.8
NC_019978:875941:877158877158877631474Halobacteroides halobius DSM 5150, complete genome6,7-dimethyl-8-ribityllumazine synthase6e-0650.1
NC_019970:8938:249682496825435468Thermoanaerobacterium thermosaccharolyticum M0795, complete genome6,7-dimethyl-8-ribityllumazine synthase8e-0649.7