Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:3358008 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
33580083358511504hypothetical protein
335881833623723555chromosome segregation protein SMCQuickGO ontologyBLASTP
33625263363419894hypothetical proteinBLASTP
336360633646641059hypothetical protein
33648273365042216hypothetical protein
33651943365631438hypothetical protein
336603433670711038hypothetical protein
33671063368062957hypothetical protein
33681433368607465hypothetical protein
33687193369369651hypothetical protein
33693663370310945hypothetical protein
3370533337228117491-deoxy-D-xylulose-5-phosphate synthaseQuickGO ontologyBLASTP
337231833734811164Lysophospholipase-like proteinQuickGO ontologyBLASTP
33735183373958441rhodanese domain-containing proteinQuickGO ontologyBLASTP
337396833752331266riboflavin biosynthesis protein RibDQuickGO ontologyBLASTP
33752373376145909hypothetical protein
33763003376899600riboflavin synthase subunit alphaQuickGO ontologyBLASTP
337689233781331242GTP cyclohydrolase IIQuickGO ontologyBLASTP
3378135337860246867-dimethyl-8-ribityllumazine synthaseQuickGO ontologyBLASTP
33786053379045441NusB antitermination factorQuickGO ontologyBLASTP
337905133821283078hypothetical proteinBLASTP