Pre_GI: BLASTP Hits

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Query: NC_004129:1741816:1764790 Pseudomonas fluorescens Pf-5, complete genome

Start: 1764790, End: 1765641, Length: 852

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:1719407:173880917388091739645837Pseudomonas fluorescens F113 chromosome, complete genomerna binding s13e-152537
NC_021150:1677811:167781116778111678680870Azotobacter vinelandii CA6, complete genomeRNA binding protein, S1 family7e-112403
NC_012560:1677798:167779816777981678667870Azotobacter vinelandii DJ, complete genomeRNA binding protein, S1 family7e-112403
NC_014933:364463:367998367998368834837Bacteroides helcogenes P 36-108 chromosome, complete genomehypothetical protein2e-72272
NC_008322:1898000:191664119166411917480840Shewanella sp. MR-7, complete genomehypothetical protein3e-70265
NC_016602:2037162:203875920387592039595837Vibrio furnissii NCTC 11218 chromosome 1, complete sequenceRNA binding S1 domain-containing protein3e-68258
NC_010334:2131939:215396821539682154801834Shewanella halifaxensis HAW-EB4, complete genomehypothetical protein1e-64246
NC_016026:1969766:199627519962751997147873Micavibrio aeruginosavorus ARL-13 chromosome, complete genome3-deoxy-7-phosphoheptulonate synthase5e-63241
NC_013730:2187898:218899421889942189845852Spirosoma linguale DSM 74, complete genomehypothetical protein1e-59229
NC_013173:1712138:171597117159711716801831Desulfomicrobium baculatum DSM 4028, complete genomenucleic acid binding protein3e-59228
NC_006138:225832:250352250352251182831Desulfotalea psychrophila LSv54, complete genomehypothetical protein3e-58225
NC_014935:595685:598865598865599782918Nitratifractor saLSUginis DSM 16511 chromosome, complete genomehypothetical protein3e-55215
NC_015496:2436089:243608924360892436922834Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomehypothetical protein9e-55213
NC_019978:2071435:207728220772822078109828Halobacteroides halobius DSM 5150, complete genomehypothetical protein2e-53209
NC_017045:328031:342940342940343764825Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,hypothetical protein2e-45182
NC_014738:167707:182616182616183440825Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,hypothetical protein2e-45182
NC_020125:1545578:154940715494071550231825Riemerella anatipestifer RA-CH-2, complete genomehypothetical protein2e-45182
NC_008261:2117207:213887821388782139720843Clostridium perfringens ATCC 13124, complete genomehypothetical protein1e-41170
NC_007498:3085511:310167931016793102503825Pelobacter carbinolicus DSM 2380, complete genomehypothetical protein3e-41169
NC_003366:1901898:192356519235651924407843Clostridium perfringens str. 13, complete genomehypothetical protein6e-41167
NC_008262:1795914:181292718129271813769843Clostridium perfringens SM101, complete genomehypothetical protein1e-40166
NC_014633:655693:671347671347672186840Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceRNA binding S1 domain-containing protein3e-35149
NC_015873:2260048:227737622773762278287912Megasphaera elsdenii DSM 20460, complete genomehypothetical protein2e-29129
NC_011725:1182000:118332311833231184177855Bacillus cereus B4264 chromosome, complete genomehypothetical protein1e-22106
NC_010163:285710:304481304481305332852Acholeplasma laidlawii PG-8A chromosome, complete genomehypothetical protein2e-1583.6
NC_015678:966000:969278969278970132855Streptococcus parasanguinis ATCC 15912 chromosome, complete genomes1 RNA binding domain-containing protein7e-1064.7