Pre_GI: BLASTP Hits

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Query: NC_004129:1741816:1753593 Pseudomonas fluorescens Pf-5, complete genome

Start: 1753593, End: 1753703, Length: 111

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004129:195347:1953471953472044819135Pseudomonas fluorescens Pf-5, complete genomeadhesin/haemagglutinin, HecA family3e-0857.4
NC_004129:1741816:1741816174181617505368721Pseudomonas fluorescens Pf-5, complete genomefilamentous haemagglutinin family protein, intein-containing3e-0857
NC_012660:3573154:35846183584618359679412177Pseudomonas fluorescens SBW25 chromosome, complete genomeputative adhesin1e-0755.1
NC_015379:908904:9089049089049181829279Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative adhesin4e-0753.5
NC_016830:952342:9523429523429616089267Pseudomonas fluorescens F113 chromosome, complete genomeadhesin/hemagglutinin, HecA family4e-0753.5
NC_016830:1719407:17194071719407173194312537Pseudomonas fluorescens F113 chromosome, complete genomefilamentous hemagglutinin, intein-containing4e-0753.1