Pre_GI: BLASTP Hits

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Query: NC_003903:167825:178395 Streptomyces coelicolor A3(2) plasmid SCP1, complete sequence

Start: 178395, End: 178949, Length: 555

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: These bacteria are widely distributed in nature, especially in the soil. Well-studied antiobiotic-producing bacterium. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:6343000:635278863527886353318531Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein4e-50197
NC_016109:4753493:476714647671464767670525Kitasatospora setae KM-6054, complete genomehypothetical protein2e-47187
NC_003155:6295078:630117763011776301710534Streptomyces avermitilis MA-4680, complete genomehypothetical protein2e-44178
NC_016109:6640000:664830166483016648822522Kitasatospora setae KM-6054, complete genomehypothetical protein1e-35148
NC_016582:6811273:682279568227956823310516Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein4e-33140
NC_016109:4455158:446636944663694466818450Kitasatospora setae KM-6054, complete genomehypothetical protein2e-30132
NC_013929:1799594:182110018211001821615516Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein3e-30130
NC_003888:3111998:312391431239143124393480Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-28125
NC_018524:2246225:225237322523732252885513Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehypothetical protein2e-21101
NC_016887:221788:232330232330232860531Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein2e-1788.6
NC_016887:1093609:110189211018921102413522Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein2e-1479
NC_006361:4098469:410678841067884107303516Nocardia farcinica IFM 10152, complete genomehypothetical protein5e-1477
NC_016111:5515462:552224355222435522422180Streptomyces cattleya NRRL 8057, complete genomehypothetical protein4e-1271.2
NC_013510:465188:481615481615482160546Thermomonospora curvata DSM 43183, complete genomehypothetical protein3e-1065.1
NC_010572:8493946:528052805813534Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein7e-1063.5
NC_010572:1:528052805813534Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein7e-1063.5
NC_010572:8493946:854011785401178540650534Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein7e-1063.5
NC_018524:2246225:225166022516602252202543Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehypothetical protein1e-0962.8
NC_021177:6127431:613185461318546132600747Streptomyces fulvissimus DSM 40593, complete genomehypothetical protein1e-0755.8