Pre_GI: BLASTP Hits

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Query: NC_003888:6103534:6144349 Streptomyces coelicolor A3(2), complete genome

Start: 6144349, End: 6145470, Length: 1122

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012108:2542328:2561377256137725625101134Desulfobacterium autotrophicum HRM2, complete genomeTbpA5e-76285
NC_013946:415028:4411734411734422551083Meiothermus ruber DSM 1279 chromosome, complete genomeABC transporter periplasmic binding protein, thiB subfamily7e-68258
NC_013174:309943:3346553346553357461092Jonesia denitrificans DSM 20603, complete genomeABC transporter, periplasmic binding protein, thiB subfamily1e-67256
NC_001263:243000:2635362635362645671032Deinococcus radiodurans R1 chromosome 1, complete sequenceABC transporter, periplasmic substrate-binding protein, solute-binding family 11e-49197
NC_015680:930483:9469259469259479681044Pyrococcus yayanosii CH1 chromosome, complete genomethiamine-binding periplasmic protein1e-46187
NC_016751:1776669:179397517939751794946972Marinitoga piezophila KA3 chromosome, complete genomeABC transporter substrate-binding protein6e-25115
NC_012912:647369:665383665383666366984Dickeya zeae Ech1591, complete genomethiamine ABC transporter, periplasmic binding protein3e-22106
NC_008740:1357312:1362512136251213635161005Marinobacter aquaeolei VT8, complete genomeABC transporter, periplasmic binding protein, thiB subfamily3e-1790.1
NC_014774:1210004:4228422852291002Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completethiamine transporter substrate binding subunit3e-1789.7
NC_013158:363222:3797053797053808711167Halorhabdus utahensis DSM 12940, complete genomeABC transporter, periplasmic binding protein, thiB subfamily1e-1687.8
NC_014122:967194:9842959842959853201026Methanocaldococcus infernus ME chromosome, complete genomeextracellular solute-binding protein family 12e-0963.9
NC_009012:1901492:1919023191902319201291107Clostridium thermocellum ATCC 27405, complete genomeextracellular solute-binding protein, family 17e-0962
NC_014364:1990000:2000764200076420018251062Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeextracellular solute-binding protein family 14e-0859.3
NC_012563:1348500:1363689136368913647351047Clostridium botulinum A2 str. Kyoto, complete genomeABC transporter, substrate-binding protein3e-0653.1
NC_017179:3222015:3226058322605832271071050Clostridium difficile BI1, complete genomeABC transporter substrate-binding protein6e-0652
NC_013315:3214063:3218106321810632192271122Clostridium difficile CD196 chromosome, complete genomeABC transporter substrate-binding protein7e-0652