Pre_GI: BLASTP Hits

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Query: NC_003888:4927170:4964061 Streptomyces coelicolor A3(2), complete genome

Start: 4964061, End: 4967069, Length: 3009

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015656:105840:1182281182281212182991Frankia symbiont of Datisca glomerata chromosome, complete genomepeptidoglycan-binding LysM1e-24115
NC_007777:461500:4816484816484858054158Frankia sp. CcI3, complete genomePeptidoglycan-binding LysM1e-1999.4
NC_016943:1735057:1737586173758617409573372Blastococcus saxobsidens DD2, complete genomeputative LysM domain peptidoglycan-binding protein5e-1790.5
NC_017955:3731480:3790438379043837937403303Modestobacter marinus, complete genomeLysM domain peptidoglycan-binding protein3e-1378.2
NC_017186:7822448:7834595783459578372882694Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein2e-1172.4
NC_014318:7821227:7834549783454978372422694Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein2e-1172.4
NC_007491:53723:5417554175573663192Rhodococcus erythropolis PR4 plasmid pREL1, complete sequencehypothetical protein1e-0965.9
NC_015957:2678544:2700073270007327027962724Streptomyces violaceusniger Tu 4113 chromosome, complete genometranscriptional activator domain-containing protein2e-0862.4
NC_013131:7945280:7956804795680479596112808Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, SARP family4e-0861.2
NC_003903:167825:1691311691311727423612Streptomyces coelicolor A3(2) plasmid SCP1, complete sequenceputative large membrane protein9e-0860.1
NC_016582:10137951:1014269810142698101454272730Streptomyces bingchenggensis BCW-1 chromosome, complete genomeSARP family transcriptional regulator5e-0757.4
NC_003155:210240:2151582151582186253468Streptomyces avermitilis MA-4680, complete genomehypothetical protein7e-0757