Pre_GI: BLASTP Hits

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Query: NC_003888:4314389:4318648 Streptomyces coelicolor A3(2), complete genome

Start: 4318648, End: 4319373, Length: 726

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:6371019:639369163936916394449759Streptomyces scabiei 87.22 chromosome, complete genomeIclR family transcriptional regulator7e-35147
NC_011961:528837:528837528837529649813Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequencetranscriptional regulator, IclR family3e-1479
NC_016884:2701217:271982827198282720604777Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeIclR family transcriptional regulator2e-1375.9
NC_013510:5394432:540096854009685401714747Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, IclR family1e-1273.6
NC_003888:6853107:686865768686576869469813Streptomyces coelicolor A3(2), complete genometranscriptional regulator for glyoxylate bypass5e-1271.2
NC_015387:1803938:1814174181417418168162643Marinithermus hydrothermalis DSM 14884 chromosome, complete genometranscriptional regulator, IclR family1e-0963.2
NC_008687:229941:229941229941230696756Paracoccus denitrificans PD1222 chromosome 2, complete sequenceregulatory proteins, IclR1e-0757
NC_007503:1111457:113341811334181134203786Carboxydothermus hydrogenoformans Z-2901, complete genometranscriptional regulator, IclR family2e-0756.2
NC_006510:1995916:201138620113862012162777Geobacillus kaustophilus HTA426, complete genometranscriptional regulator2e-0653.1
NC_015589:2447132:244890124489012449674774Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator IclR3e-0652
NC_010511:6756000:676853467685346769319786Methylobacterium sp. 4-46 chromosome, complete genomeIclR family transcriptional regulator4e-0651.6
NC_008269:428898:451805451805452554750Rhodococcus sp. RHA1 plasmid pRHL1, complete sequenceprobable transcriptional regulator, IclR family6e-0651.2