Pre_GI: BLASTP Hits

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Query: NC_003888:2814360:2823656 Streptomyces coelicolor A3(2), complete genome

Start: 2823656, End: 2825212, Length: 1557

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016111:1766010:1771318177131817727361419Streptomyces cattleya NRRL 8057, complete genomeintegrase0667
NC_016947:4500329:4506220450622045077461527Mycobacterium intracellulare MOTT-02 chromosome, complete genomephague integrase4e-40166
NC_017904:2724941:2741824274182427432421419Mycobacterium sp. MOTT36Y chromosome, complete genomephage Integrase1e-34147
NC_014210:618500:6252376252376267991563Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,Resolvase domain protein6e-32139
NC_014659:3654979:3670491367049136723291839Rhodococcus equi 103S, complete genomephague integrase8e-32138
NC_016887:1093609:1098705109870511003961692Nocardia cyriacigeorgica GUH-2, complete genomeputative phage Integrase4e-31136
NC_008268:7052202:7055865705586570576071743Rhodococcus sp. RHA1, complete genomepossible integrase2e-30134
NC_003888:4750489:4754366475436647560151650Streptomyces coelicolor A3(2), complete genomeintegrase1e-28128
NC_013521:345308:3614883614883627681281Sanguibacter keddieii DSM 10542, complete genomesite-specific recombinase, DNA invertase Pin1e-1791.7
NC_016109:785819:7951807951807968651686Kitasatospora setae KM-6054, complete genomehypothetical protein3e-1273.6
NC_003888:4031299:4038637403863740402801644Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-1068.2
NC_003155:5443230:5457668545766854591011434Streptomyces avermitilis MA-4680, complete genomeintegrase/recombinase2e-1067.4
NC_016609:6750111:6756125675612567577111587Niastella koreensis GR20-10 chromosome, complete genomeResolvase domain-containing protein9e-1065.5
NC_006582:2944237:2992454299245429938571404Bacillus clausii KSM-K16, complete genomesite-specific recombinase for integration and excision5e-0963.2
NC_015500:1204501:1222227122222712239061680Treponema brennaborense DSM 12168 chromosome, complete genomeRecombinase7e-0962.8
NC_008576:3307297:3314177331417733155141338Magnetococcus sp. MC-1, complete genomeResolvase, N-terminal domain8e-0962.4
NC_004461:1:4244142441440691629Staphylococcus epidermidis ATCC 12228, complete genomecassette chromosome recombinase B6e-0859.3
NC_016948:419500:4334974334974348431347Mycobacterium intracellulare MOTT-64 chromosome, complete genomehypothetical protein6e-0859.3
NC_002978:618723:6266506266506281191470Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage LambdaW5, site-specific recombinase, resolvase family1e-0758.9
NC_011666:2109274:2112431211243121141161686Methylocella silvestris BL2, complete genomeResolvase domain protein2e-0757.8
NC_019904:3749160:3749160374916037507641605Echinicola vietnamensis DSM 17526 chromosome, complete genomesite-specific recombinase, DNA invertase Pin2e-0757.4
NC_008699:1132790:1150783115078311521801398Nocardioides sp. JS614, complete genomeRecombinase4e-0756.6
NC_013169:805124:8088908088908104791590Kytococcus sedentarius DSM 20547, complete genomesite-specific recombinase, DNA invertase Pin4e-0756.6
NC_008726:1533727:1537760153776015391631404Mycobacterium vanbaalenii PYR-1, complete genomeRecombinase1e-0655.1
NC_003295:921256:9375829375829389641383Ralstonia solanacearum GMI1000, complete genomePUTATIVE SITE-SPECIFIC INTEGRASE/RECOMBINASE PROTEIN9e-0652.4