Pre_GI: BLASTP Hits

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Query: NC_003366:2356148:2361658 Clostridium perfringens str. 13, complete genome

Start: 2361658, End: 2361837, Length: 180

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008262:2242432:224794322479432248122180Clostridium perfringens SM101, complete genomesmall, acid-soluble spore protein6e-28122
NC_008262:2348328:236050223605022360684183Clostridium perfringens SM101, complete genomesmall, acid-soluble spore protein 13e-23107
NC_017294:327433:333649333649333828180Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomesmall acid-soluble spore protein C12e-2097.4
NC_020291:5808856:582516758251675825355189Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomesmall, acid-soluble spore protein 17e-2095.9
NC_010001:473354:476696476696476917222Clostridium phytofermentans ISDg, complete genomesmall acid-soluble spore protein alpha/beta type4e-1063.5
NC_014964:1309845:133142913314291331656228Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completealpha/beta type small acid-soluble spore protein4e-0753.5
NC_014964:1309845:133105813310581331285228Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completealpha/beta type small acid-soluble spore protein5e-0753.1
NC_015958:1422319:144287414428741443101228Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomesmall acid-soluble spore protein alpha/beta type6e-0752.8
NC_018664:1729794:174415017441501744362213Clostridium acidurici 9a chromosome, complete genomesmall acid-soluble spore protein, alpha/beta type9e-0752.4