Pre_GI: BLASTP Hits

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Query: NC_003308:1:7578 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Start: 7578, End: 8273, Length: 696

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003065:27163:409814098141676696Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencehypothetical protein3e-134477
NC_003065:27163:357923579236475684Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencehypothetical protein1e-26119
NC_003308:1:238923893072684Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence5 protein1e-26119
NC_003065:27163:468644686447529666Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceindole-3-lactate synthase1e-24113
NC_003308:1:136051360514126522Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencegene 5 protein4e-1271.6
NC_003308:1:613961396870732Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceC' protein5e-1064.7
NC_003065:27163:395423954240273732Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencebeta-glucosidase5e-1064.7
NC_011982:130199:137201137201137929729Agrobacterium vitis S4 plasmid pTiS4, complete sequenceT-DNA oncoprotein9e-1063.9
NC_003065:27163:421554215543099945Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencehypothetical protein6e-0961.2
NC_003308:1:875287529696945Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceE protein6e-0961.2