Pre_GI: BLASTP Hits

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Query: NC_003308:1:33744 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Start: 33744, End: 35699, Length: 1956

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003065:27163:6714767147691021956Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencehydantoin utilization protein B01163
NC_014910:1912552:1924725192472519267041980Alicycliphilus denitrificans BC chromosome, complete genome5-oxoprolinase (ATP-hydrolyzing)0905
NC_015458:2441435:2448512244851224505332022Pusillimonas sp. T7-7 chromosome, complete genomehydantoin utilization protein B1e-73278
NC_011144:2770842:2781732278173227834021671Phenylobacterium zucineum HLK1, complete genome5-oxoprolinase (ATP-hydrolyzing)6e-49196
NC_006510:2910000:2915852291585229175881737Geobacillus kaustophilus HTA426, complete genomeN-methylhydantoinase B (ATP-hydrolyzing)8e-49195
NC_013966:399215:3992153992154009661752Haloferax volcanii DS2 plasmid pHV4, complete sequenceN-methylhydantoinase (ATP-hydrolyzing) B3e-48194
NC_017273:352150:3677613677613694161656Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete5-oxoprolinase9e-47188
NC_011420:3822765:3845602384560238472841683Rhodospirillum centenum SW, complete genomeN-methylhydantoinase B (HuyB-1)3e-46187
NC_014006:1862000:1887301188730118890731773Sphingobium japonicum UT26S chromosome 1, complete genomeN-methylhydantoinase B2e-45184
NC_014299:218252:2419942419942438021809Halalkalicoccus jeotgali B3 plasmid 2, complete sequence5-oxoprolinase (ATP-hydrolyzing)4e-45183
NC_012440:1405879:1407659140765914092331575Persephonella marina EX-H1, complete genome5-oxoprolinase (5-oxo-L-prolinase) (Pyroglutamase) (5-OPase)1e-44181
NC_014916:22644:3167531675334681794Geobacillus sp. Y412MC52 plasmid pGYMC5201, complete sequence5-oxoprolinase (ATP-hydrolyzing)2e-43177
NC_013412:33834:4326443264450571794Geobacillus sp. Y412MC61 plasmid pGYMC6101, complete sequence5-oxoprolinase (ATP-hydrolyzing)2e-43177
NC_011144:2674242:2684456268445626861921737Phenylobacterium zucineum HLK1, complete genomeN-methylhydantoinase B/acetone carboxylase, alpha subunit5e-42172
NC_014831:1843835:1862632186263218643651734Thermaerobacter marianensis DSM 12885 chromosome, complete genome5-oxoprolinase (ATP-hydrolyzing)6e-41169
NC_013524:1207845:1218887121888712206441758Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genome5-oxoprolinase (ATP-hydrolyzing)1e-40168
NC_018000:1914945:1930437193043719321461710Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein1e-39165
NC_013947:5546315:5544612554461255463181707Stackebrandtia nassauensis DSM 44728 chromosome, complete genome5-oxoprolinase (ATP-hydrolyzing)3e-39163
NC_000918:1353310:1354860135486013564251566Aquifex aeolicus VF5, complete genomeN-methylhydantoinase B8e-38159
NC_002754:1811500:1825283182528318268151533Sulfolobus solfataricus P2, complete genomeN-methyl hydantoinase B (hyuB-2)2e-37157
NC_012623:1691759:1698813169881317003451533Sulfolobus islandicus Y.N.15.51 chromosome, complete genome5-oxoprolinase2e-37157
NC_012982:1569426:1581828158182815837051878Hirschia baltica ATCC 49814, complete genome5-oxoprolinase (ATP-hydrolyzing)1e-36155
NC_012589:783704:7934967934967950281533Sulfolobus islandicus L.S.2.15, complete genome5-oxoprolinase (ATP-hydrolyzing)2e-36154
NC_006395:161455:1634461634461650741629Haloarcula marismortui ATCC 43049 plasmid pNG700, completeN-methylhydantoinase B3e-36153
NC_007953:1088933:1097573109757310993721800Burkholderia xenovorans LB400 chromosome 3, complete sequence5-oxoprolinase (ATP-hydrolyzing)5e-36153
NC_014006:1365207:1378567137856713798801314Sphingobium japonicum UT26S chromosome 1, complete genomeN-methylhydantoinase B1e-34148
NC_015944:10500:3092130921325491629Haloarcula hispanica ATCC 33960 plasmid pHH400, complete sequenceN-methylhydantoinase B3e-34147
NC_008541:4066294:4093265409326540949381674Arthrobacter sp. FB24 chromosome 1, complete sequence5-oxoprolinase (ATP-hydrolyzing)2e-33144
NC_018532:166468:1685091685091701821674Arthrobacter sp. Rue61a plasmid p232, complete sequenceN-methylhydantoinase B/ oxoprolinase HyuB4e-33143
NC_020453:1025891:1039642103964210414741833Agromonas oligotrophica S58 DNA, complete genomehypothetical protein4e-33143
NC_006270:1936952:1936952193695219386911740Bacillus licheniformis ATCC 14580, complete genomeHydantoin Utilization protein B1e-32141
NC_006322:1932847:1937798193779819395371740Bacillus licheniformis ATCC 14580, complete genomehypothetical protein1e-32141
NC_015591:1161007:1172675117267511743151641Sinorhizobium meliloti AK83 chromosome 3, complete sequence5-oxoprolinase7e-32139
NC_021171:2019755:2025814202581420275831770Bacillus sp. 1NLA3E, complete genome5-oxoprolinase1e-31138
NC_007181:1856455:1858503185850318602271725Sulfolobus acidocaldarius DSM 639, complete genomehypothetical protein3e-31137
NC_010676:2793237:2823288282328828250361749Burkholderia phytofirmans PsJN chromosome 2, complete sequence5-oxoprolinase (ATP-hydrolyzing)3e-31137
NC_014298:310964:3135743135743154541881Halalkalicoccus jeotgali B3 plasmid 1, complete sequence5-oxoprolinase (ATP-hydrolyzing)3e-31137
NC_013923:363500:3635653635653656102046Natrialba magadii ATCC 43099 plasmid pNMAG01, complete sequence5-oxoprolinase (ATP-hydrolyzing)4e-31136
NC_008148:1711679:1717696171769617195941899Rubrobacter xylanophilus DSM 9941, complete genome5-oxoprolinase (ATP-hydrolyzing)1e-30135
NC_017273:352150:3694553694553710291575Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete5-oxoprolinase2e-30134
NC_003911:1791878:1806320180632018079691650Silicibacter pomeroyi DSS-3, complete genomehydantoinase/oxoprolinase family protein2e-30134
NC_002754:2667322:2677189267718926787301542Sulfolobus solfataricus P2, complete genomeN-methylhydantoinase B (hyuB-3)5e-30133
NC_015312:1220500:1227455122745512294612007Pseudonocardia dioxanivorans CB1190 chromosome, complete genome5-oxoprolinase8e-30132
NC_012589:2351811:2370630237063023721681539Sulfolobus islandicus L.S.2.15, complete genome5-oxoprolinase (ATP-hydrolyzing)2e-29131
NC_013769:2335062:2353703235370323552411539Sulfolobus islandicus L.D.8.5 chromosome, complete genome5-oxoprolinase1e-29131
NC_010525:421769:4237154237154252591545Thermoproteus neutrophilus V24Sta, complete genome5-oxoprolinase (ATP-hydrolyzing)1e-29131
NC_014253:933261:9355389355389392003663Methanohalobium evestigatum Z-7303 chromosome, complete genome5-oxoprolinase1e-28129
NC_009440:1045882:1058857105885710603891533Metallosphaera sedula DSM 5348 chromosome, complete genome5-oxoprolinase2e-28127
NC_008319:1950889:1970118197011819738223705Synechococcus sp. CC9311, complete genomeHydantoinase/oxoprolinase:Hydantoinase B/oxoprolinase2e-26120
NC_007955:2281070:2285245228524522888653621Methanococcoides burtonii DSM 6242, complete genome5-oxoprolinase (ATP-hydrolyzing)1e-25118
NC_015703:4417342:4434480443448044382203741Runella slithyformis DSM 19594 chromosome, complete genome5-oxoprolinase7e-25115
NC_018876:1551155:1563576156357615672233648Methanolobus psychrophilus R15 chromosome, complete genome5-oxoprolinase (ATP-hydrolyzing)4e-24113
NC_008314:2744553:2755733275573327594613729Ralstonia eutropha H16 chromosome 2, complete sequenceHydantoinase/oxoprolinase containing both A and B domains4e-23110
NC_017277:3083494:3083494308349430872523759Synechocystis sp. PCC 6803, complete genomehypothetical protein7e-23109
NC_017052:3073713:3082494308249430862523759Synechocystis sp. PCC 6803 substr. PCC-N, complete genomehypothetical protein7e-23109
NC_017039:3073724:3082505308250530862633759Synechocystis sp. PCC 6803 substr. PCC-P, complete genomehypothetical protein7e-23109
NC_006677:215466:2353702353702369381569Gluconobacter oxydans 621H, complete genomeN-methylhydantoinase B7e-23109
NC_000911:3075896:3084677308467730884353759Synechocystis sp. PCC 6803, complete genomehypothetical protein7e-23109
NC_015676:1736375:1736375173637517400193645Methanosalsum zhilinae DSM 4017 chromosome, complete genome5-oxoprolinase7e-22105
NC_021184:3912805:3926082392608239279471866Desulfotomaculum gibsoniae DSM 7213, complete genomeN-methylhydantoinase B/acetone carboxylase, alpha subunit2e-21104
NC_008148:1859888:1869819186981918718792061Rubrobacter xylanophilus DSM 9941, complete genomeHydantoinase B/oxoprolinase1e-1999
NC_007513:1311957:1311957131195713156523696Synechococcus sp. CC9902, complete genome5-oxoprolinase (ATP-hydrolyzing)4e-1997.1
NC_007516:1439537:1467036146703614706833648Synechococcus sp. CC9605, complete genome5-oxoprolinase (ATP-hydrolyzing)2e-1894.7
NC_015976:2064387:2064387206438720664022016Sphingobium sp. SYK-6, complete genomeputative hydantoinase B3e-1894
NC_006513:1379735:1414604141460414166582055Azoarcus sp. EbN1, complete genomepossible subunit of acetophenone carboxylase3e-1894
NC_006270:1936952:1935477193547719369551479Bacillus licheniformis ATCC 14580, complete genomeN-methylhydantoinase B1e-1792.4
NC_006322:1932847:1936323193632319378011479Bacillus licheniformis ATCC 14580, complete genomehypothetical protein1e-1792.4
NC_008820:1766973:1768617176861717722913675Prochlorococcus marinus str. MIT 9303, complete genomeHydantoinase/oxoprolinase:Hydantoinase B/oxoprolinase1e-1792.4