Pre_GI: BLASTP Hits

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Query: NC_003198:1908238:1926877 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 1926877, End: 1927047, Length: 171

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:2580774:259930325993032599473171Escherichia coli KO11FL chromosome, complete genomehypothetical protein5e-24109
CP002516:2580774:259930325993032599473171Escherichia coli KO11, complete genomehypothetical protein5e-24109
CP002185:1493280:150637715063771506547171Escherichia coli W, complete genomeRac prophage; conserved protein5e-24109
NC_000913:1404000:141586214158621416032171Escherichia coli K12, complete genomeRac prophage; conserved protein2e-1787.4
AC_000091:1407693:141955214195521419722171Escherichia coli W3110 DNA, complete genomehypothetical protein2e-1787.4
NC_010473:1493983:150525815052581505428171Escherichia coli str. K-12 substr. DH10B, complete genomeRac prophage; conserved protein2e-1787.4
NC_012759:1296000:130792113079211308091171Escherichia coli BW2952 chromosome, complete genomeRac prophage protein2e-1787.4
NC_012947:2366000:238070723807072380877171Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completebacteriophage protein2e-1787.4
NC_012967:1403733:141500814150081415178171Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein2e-1787.4
NC_011415:1472500:148126614812661481442177Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-1787.4
NC_010102:1829357:183152318315231831693171Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-0754.3