Pre_GI: BLASTP Hits

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Query: NC_003063:1358738:1362085 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1362085, End: 1362567, Length: 483

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:693810:712189712189712611423Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein3e-55213
NC_007645:2294553:233269523326952333102408Hahella chejuensis KCTC 2396, complete genomepredicted transcriptional regulator2e-1684.7
NC_008752:3684739:368699036869903687433444Acidovorax avenae subsp. citrulli AAC00-1, complete genometranscriptional regulator, BadM/Rrf2 family1e-1168.9
NC_008687:302450:303258303258303755498Paracoccus denitrificans PD1222 chromosome 2, complete sequencetranscriptional regulator, BadM/Rrf2 family2e-1168.2
NC_010995:4460413:447790244779024478402501Cellvibrio japonicus Ueda107, complete genomeTranscriptional regulator family2e-1168.2
NC_015138:2110149:212304021230402123483444Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeBadM/Rrf2 family transcriptional regulator2e-1167.8
NC_014840:205723:237346237346237768423Pantoea sp. At-9b plasmid pPAT9B03, complete sequencetranscriptional regulator, BadM/Rrf2 family2e-0961.2
NC_014217:1352777:136840813684081368872465Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, BadM/Rrf2 family6e-0960.1
NC_014323:3976351:401382540138254014268444Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein9e-0959.3
NC_010516:359310:362087362087362518432Clostridium botulinum B1 str. Okra, complete genomerrf2 family protein3e-0857.4
NC_016582:11878078:119013021190130211901736435Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein8e-0753.1
NC_008686:1383891:139007213900721390542471Paracoccus denitrificans PD1222 chromosome 1, complete sequencetranscriptional regulator, BadM/Rrf2 family1e-0652
NC_009952:2752500:275702127570212757491471Dinoroseobacter shibae DFL 12, complete genometranscriptional regulator3e-0651.2