Pre_GI: OUP Neighbours

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Query: NC_014334:493308 Lactobacillus casei str. Zhang chromosome, complete genome

D: 30.9399

Host Lineage: Lactobacillus casei; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactobacillus casei str. Zhang was isolated from traditional home-made koumiss (fermented mare's milk) in Inner Mongolia, China. This strain has the potential probiotic properties such as high resistance to acidic pH and bile salt. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, fermented milks, and other products, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully created, cultivated, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus casei is used as a starter culture during milk fermentation and for the flavor development of certain bacterial-ripened cheeses.

Number of Neighbours: 6




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_011138:3182807*Alteromonas macleodii 'Deep ecotype', complete genome75.0368 %Subject Query44.8872
NC_008526:465453Lactobacillus casei ATCC 334, complete genome91.1183 %Subject ←→ Query28.1995
NC_008526:74500*Lactobacillus casei ATCC 334, complete genome77.2089 %Subject ←→ Query28.9383
NC_014334:589526Lactobacillus casei str. Zhang chromosome, complete genome76.7034 %Subject ←→ Query32.7578
NC_010999:524905Lactobacillus casei, complete genome91.3542 %Subject ←→ Query29.347
NC_008700:672326*Shewanella amazonensis SB2B, complete genome75.4412 %Subject ←→ Query35.3204