Pre_GI: OUP Neighbours

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Query: NC_017268:546376 Treponema pallidum subsp. pallidum str. Chicago chromosome,

D: 33.1192

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This organisms is divided into subspecies each of which causes a specific disease. pallidum causes the venereal disease syphilis. pertenue, carateum and endemicum cause the skin infections yaws, pinta and bejel, respectively. Cells are motile, slender, helically shaped flexible organisms, 0.1-0.18 microns in diameter and 6-20 microns long.

Number of Neighbours: 26




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_000919:107373*Treponema pallidum subsp. pallidum str. Nichols, complete genome75.4933 %Subject ←→ Query33.8461
NC_016843:547149Treponema pallidum subsp. pertenue str. Gauthier chromosome,92.5429 %Subject ←→ Query33.9027
NC_016842:546661Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete92.6103 %Subject ←→ Query33.9418
NC_010741:107370*Treponema pallidum subsp. pallidum SS14, complete genome75.4933 %Subject ←→ Query33.9494
NC_016844:547069Treponema pallidum subsp. pallidum DAL-1 chromosome, complete92.5827 %Subject ←→ Query33.9677
NC_021508:107384*Treponema pallidum subsp. pallidum SS14, complete genome75.4565 %Subject ←→ Query34.2656
NC_016844:107382*Treponema pallidum subsp. pallidum DAL-1 chromosome, complete75.4534 %Subject ←→ Query34.9891
NC_017268:107387*Treponema pallidum subsp. pallidum str. Chicago chromosome,75.4534 %Subject ←→ Query35.0316
NC_021508:546592Treponema pallidum subsp. pallidum SS14, complete genome92.5245 %Subject ←→ Query35.062
NC_016848:547115Treponema pallidum subsp. pertenue str. CDC2 chromosome, complete92.5797 %Subject ←→ Query35.7308
NC_010741:546573Treponema pallidum subsp. pallidum SS14, complete genome92.5521 %Subject ←→ Query41.5824
NC_000919:545141Treponema pallidum subsp. pallidum str. Nichols, complete genome92.6042 %Subject ←→ Query41.6809
NC_015714:542679Treponema paraluiscuniculi Cuniculi A chromosome, complete genome91.9455 %Subject ←→ Query42.5222