Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_014012: Shewanella violacea DSS12, complete genome

NCBI: NC_014012

Host Lineage: Shewanella violacea; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Shewanella violacea DSS12 was isolated from mud, taken at a depth of 5110 m, from the Ryukyu Trench in the Philippine Sea. Shewanella violacea is psychrophilic and barophilic, with an optimum growth temperature and pressure of 8 degrees C and 30 MPa, respectively. This organism is able to grow at pressures from 0.1 MPa to 70Mpa, however, no growth occurs a temperatures above 20 degrees C.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
120728922623418946Island text1.5065233.031449.9269BLASTN207289.gbk
21097938*112246324526Island text1.8257630.222539.7369Neighbours21BLASTN1097938.gbk
31421979*144486722889Island text1.5488834.861435.12Neighbours21BLASTN1421979.gbk
41676983170572328741Island text2.5027231.89924.863Neighbours21BLASTNIslandViewer 1676983.gbk
52411096243419023095Island text2.5897533.223525.0849Neighbours21BLASTNIslandViewer 2411096.gbk
62565329258573220404Island text1.9704131.013934.8429Neighbours21BLASTNIslandViewer 2565329.gbk
73356629337459917971Island text1.542830.426233.4572Neighbours21BLASTN+3356629.gbk
83812754*383429621543Island text2.2579232.046423.1427Neighbours21BLASTN+3812754.gbk