Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013093: Actinosynnema mirum DSM 43827, complete genome

NCBI: NC_013093

Host Lineage: Actinosynnema mirum; Actinosynnema; Pseudonocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolation: Blade of grass from Raritan River NJ; Country: USA; Temp: Mesophile; Temp: 10-30C; Habitat: Soil. This bacterium produces the antibiotic nocardicin A. Soil dwelling, nonmotile aerobe it has fine hyphae which form aerial and substrate mycelia. Motile spores are borne on synnemata, compact groups of erect hyphae. It produces nocardicin antibiotics and is able to inhibit growth of several Gram-positive bacteria as well as some filamentous fungi and yeasts.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111124311243Island text1.526212.059213.9359Neighbours11BLASTN1.gbk
2125363*14809922737Island text1.5297114.597519.5517Neighbours11BLASTN+125363.gbk
362647366016133689Island text1.731212.41413.5807Neighbours11BLASTN+IslandViewer 626473.gbk
473773776222824492Island text1.5379511.557615.1663Neighbours11BLASTN+737737.gbk
5832971*85669123721Island text1.4081814.275319.2837Neighbours11BLASTN+832971.gbk
691524893740622159Island text2.0740713.026523.9135Neighbours11BLASTN915248.gbk
71036772*108759950828Island text2.5185515.216619.3013Neighbours11BLASTN+IslandViewer 1036772.gbk
81157476*117633118856Island text1.4688611.794719.5822Neighbours11BLASTN+1157476.gbk
91213908*124337529468Island text3.0311415.087213.3429Neighbours11BLASTN+IslandViewer 1213908.gbk
101411882*143830226421Island text2.275914.167213.2937Neighbours11BLASTN+IslandViewer 1411882.gbk
111909305*193716827864Island text1.8871214.185824.0708Neighbours11BLASTN+1909305.gbk
122132284215260320320Island text1.9540211.851518.2665Neighbours11BLASTN+2132284.gbk
132230171*225498024810Island text2.0322913.34039.08103Neighbours11BLASTN+IslandViewer 2230171.gbk
142471574251123439661Island text2.3310712.528122.0181Neighbours11BLASTN+2471574.gbk
152547608256628018673Island text1.6260911.539416.7073Neighbours11BLASTN+2547608.gbk
162599591*261994820358Island text1.4906911.733920.4349Neighbours11BLASTN2599591.gbk
172633000*269098057981Island text2.2252314.590825.7029Neighbours11BLASTN+IslandViewer 2633000.gbk
182752855277787825024Island text1.732611.979219.3629Neighbours11BLASTNIslandViewer 2752855.gbk
192895511*291828622776Island text1.4893913.578617.5174Neighbours11BLASTN+2895511.gbk
203068486311387545390Island text2.0339314.676627.5345Neighbours11BLASTN+3068486.gbk
213157897318209324197Island text1.5123312.688516.8778Neighbours11BLASTN+3157897.gbk
223768790379044621657Island text1.9630312.150421.485Neighbours11BLASTN+3768790.gbk
233791912381559923688Island text1.9160612.987717.2667Neighbours11BLASTN+IslandViewer 3791912.gbk
243996197*401960923413Island text1.64715.022325.1258Neighbours11BLASTN+IslandViewer 3996197.gbk
254247811427081623006Island text1.7049411.316418.4601Neighbours11BLASTNIslandViewer 4247811.gbk
264522751455763634886Island text1.7623313.383119.4934Neighbours11BLASTN+IslandViewer 4522751.gbk
274580448460069420247Island text1.7712712.371319.2557Neighbours11BLASTN+4580448.gbk
284890557491777827222Island text2.1656514.98925.8737Neighbours11BLASTN+IslandViewer 4890557.gbk
295419458545295833501Island text2.2631312.36528.23974Neighbours11BLASTN+IslandViewer 5419458.gbk
305653093*568007326981Island text1.5184412.335820.7333Neighbours11BLASTN+5653093.gbk
315734002575559221591Island text2.0659712.102322.9307Neighbours11BLASTN5734002.gbk
325791961581744825488Island text1.8987915.203723.2062Neighbours11BLASTN+5791961.gbk
335922777*594713024354Island text2.2932411.141218.2056Neighbours11BLASTN5922777.gbk
346511108653012519018Island text2.387411.904223.3524Neighbours11BLASTN+6511108.gbk
357174636719886524230Island text1.4817612.013612.4863Neighbours11BLASTN+7174636.gbk
367222000724526323264Island text2.2180614.803125.0414Neighbours11BLASTN7222000.gbk
377437033745991722885Island text1.8962311.376910.3014Neighbours11BLASTN+IslandViewer 7437033.gbk
387554688759509640409Island text1.4965915.637223.0235Neighbours8BLASTN+7554688.gbk
397722436*776426141826Island text1.6054715.385720.1879Neighbours11BLASTN7722436.gbk