Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013061: Pedobacter heparinus DSM 2366, complete genome

NCBI: NC_013061

Host Lineage: Pedobacter heparinus; Pedobacter; Sphingobacteriaceae; Sphingobacteriales; Bacteroidetes; Bacteria

General Information: Isolation: Soil; Temp: Mesophile; Temp: 25 - 30C; Habitat: Soil. Formerly Sphingobacterium heparinum this organism was isolated from soil. This organism is able to degrade heparin and heparan sulfate glycosaminoglycans, which are components of extracellular polysaccharides and the cell surface.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111388713887Island text1.5421224.461337.2262Neighbours358BLASTN+1.gbk
2717752*74137623625Island text1.6783228.234434.3683Neighbours21BLASTN717752.gbk
3987744*100953721794Island text1.714742528.0718Neighbours21BLASTN+IslandViewer 987744.gbk
41052957*110176648810Island text1.9974626.763723.0578Neighbours21BLASTN1052957.gbk
51236235*126557929345Island text1.7505228.189530.4529Neighbours21BLASTN1236235.gbk
61360081*138018720107Island text2.1111629.057247.8225Neighbours32BLASTN1360081.gbk
71856969*187551718549Island text1.5146424.480229.023Neighbours211856969.gbk
81948365*197592727563Island text2.4317626.593317.4374Neighbours211948365.gbk
92055000*207362818629Island text1.6183825.214620.3598Neighbours21BLASTNIslandViewer 2055000.gbk
102077603*210757229970Island text1.812126.855415.4626Neighbours21BLASTN2077603.gbk
112247191228176234572Island text2.5956127.018616.017Neighbours21BLASTN2247191.gbk
122288134*231444626313Island text1.7873424.033325.9532Neighbours21BLASTN2288134.gbk
132775623279868923067Island text1.5431524.665613.8385Neighbours21BLASTN2775623.gbk
143390399*341416323765Island text1.5551727.06128.1155Neighbours21BLASTN3390399.gbk
154286913*430755120639Island text1.9554229.368948.4931Neighbours21BLASTN4286913.gbk
164712051473936027310Island text1.8278923.668518.6624Neighbours21BLASTN4712051.gbk
174988500500996921470Island text1.7165824.677821.0901Neighbours214988500.gbk