Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012962: Photorhabdus asymbiotica, complete genome

NCBI: NC_012962

Host Lineage: Photorhabdus asymbiotica; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a North American clinical isolate from human blood. Photorhabdus asymbiota, formerly Xenorhabdus luminescens, has been isolated from human wound and blood infections often in association with spider bites. This species can also be isolated from the entomopathogenic nematode Heterorhabditis indica. Photorhabdus asymbiota is divided into two subspecies, subsp. australis which contains the Australian clinical isolates and subsp. asymbiota which contains the North American isolates. Photorhabdus is currently subdivided into three species, luminescens, temperate and asymbiotica all of which have been isolated as symbionts of heterorhabditid nematodes. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
129397631522521250Island text1.8427939.123351.3874Neighbours53BLASTN293976.gbk
248489951520630308Island text2.1900440.593643.898Neighbours41BLASTN484899.gbk
382090984059919691Island text1.5658232.513141.29Neighbours41BLASTN+820909.gbk
486929589218422890Island text1.8327830.836646.583Neighbours41BLASTN+869295.gbk
51041518106637824861Island text1.8386434.609835.0581Neighbours41BLASTN1041518.gbk
61068102112169753596Island text2.2062441.380833.1891Neighbours41BLASTN+1068102.gbk
71189021120825819238Island text1.5099130.702836.5635Neighbours21BLASTN1189021.gbk
81317602134444626845Island text1.7029333.95543.2802Neighbours41BLASTN1317602.gbk
91364638138528120644Island text1.600931.25341.4261Neighbours41BLASTN1364638.gbk
101661683171390552223Island text1.9405440.418844.8476Neighbours51BLASTN+1661683.gbk
111827000184987822879Island text1.7676435.301342.2363Neighbours41BLASTN1827000.gbk
122587756263945151696Island text1.8432637.73337.9709Neighbours41BLASTN+2587756.gbk
132639500266574326244Island text1.8462835.207335.5442Neighbours41BLASTN+2639500.gbk
143030726305134020615Island text1.5229433.618150.0146NeighboursBLASTN3030726.gbk
153060063308387423812Island text1.5098231.936829.4156Neighbours41BLASTN+3060063.gbk
163463644349841134768Island text1.9077339.621833.4389Neighbours41BLASTN+3463644.gbk
173499900355871558816Island text1.9810938.798545.8088Neighbours41BLASTN3499900.gbk
183568046362047652431Island text1.9969937.81337.3886Neighbours51BLASTN3568046.gbk
193864000*389221428215Island text1.5154131.49237.9157Neighbours51BLASTN+3864000.gbk
203933715398542551711Island text1.9323637.662137.6663Neighbours41BLASTN+3933715.gbk
214427000445406927070Island text2.0434836.753344.0588Neighbours41BLASTN4427000.gbk
224591295*461010018806Island text1.4926330.909532.8481Neighbours41BLASTN+4591295.gbk
234942000496422122222Island text1.5770336.315728.3957Neighbours41BLASTN+4942000.gbk