Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011184: Vibrio fischeri MJ11 chromosome I, complete sequence

NCBI: NC_011184

Host Lineage: Aliivibrio fischeri; Aliivibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This strain was isolated from a pinecone fish, Monocentris japonica, light-emitting organs in Japan. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This organism is found in marine environments and was originally named by Bernard Fischer during a sea voyage in the 1800s. It is a symbiont in fish and squids and is responsible for light generation in those organisms, which use it as a defense mechanism to avoid predators.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1325797*34862422828Island text2.0248827.059929.5627Neighbours21BLASTN+325797.gbk
2597496*62492627431Island text2.0248827.059929.5627Neighbours21BLASTN+597496.gbk
32369662*239577126110Island text2.0248827.059929.5627Neighbours21BLASTN2369662.gbk
42421687*244877527089Island text2.0248827.059929.5627Neighbours21BLASTN2421687.gbk
52723000*274162818629Island text2.0248827.059929.5627Neighbours21BLASTN2723000.gbk
62840713*285859917887Island text2.0248827.059929.5627344BLASTN2840713.gbk