Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011001: Burkholderia cenocepacia J2315 chromosome 2, complete sequence

NCBI: NC_011001

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain is the index strain for transmission among CF patients in the UK. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1639869432730342Island text2.6385928.30927.5884Neighbours11BLASTN+IslandViewer 63986.gbk
216381318967925867Island text2.2260824.176828.846Neighbours11BLASTNIslandViewer 163813.gbk
330250033422831729Island text1.8237520.921829.2145Neighbours11BLASTN+IslandViewer 302500.gbk
437218539909926915Island text1.7791420.317624.1737Neighbours11BLASTN+IslandViewer 372185.gbk
556897058862319654Island text1.5900417.784514.3501Neighbours11BLASTN+568970.gbk
685471387885624144Island text2.1437225.962527.7575Neighbours11BLASTN+IslandViewer 854713.gbk
71145508116707421567Island text1.7362518.29325.5939Neighbours11BLASTN+IslandViewer 1145508.gbk
81462532148427821747Island text1.5589119.380818.1782Neighbours11BLASTN+IslandViewer 1462532.gbk
92085986214868062695Island text3.3462730.55833.6307BLASTN+IslandViewer 2085986.gbk
102327633235185824226Island text1.5610618.114711.6849Neighbours11BLASTN+IslandViewer 2327633.gbk
112517159253514617988Island text1.4919418.871625.6426Neighbours11BLASTN+IslandViewer 2517159.gbk