Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010634: Yersinia pseudotuberculosis PB1/+, complete genome

NCBI: NC_010634

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116690019017923280Island text1.8259434.777837.8314Neighbours41BLASTN+IslandViewer 166900.gbk
2635362*65709921738Island text2.0575332.317331.719Neighbours41BLASTN+635362.gbk
373201675316421149Island text1.5270531.113223.2458Neighbours41BLASTN732016.gbk
41056441108059924159Island text2.1780333.408831.4683Neighbours41BLASTN1056441.gbk
51175404121321037807Island text5.0357440.156323.271Neighbours21BLASTN+IslandViewer 1175404.gbk
61342393136733024938Island text2.333333.197920.5948Neighbours41BLASTN+IslandViewer 1342393.gbk
71565788158879323006Island text1.7817133.011329.3166Neighbours51BLASTN+1565788.gbk
81755548179542439877Island text1.835534.075922.1683Neighbours41BLASTN+1755548.gbk
91809500182909919600Island text2.3340630.582223.2684Neighbours41BLASTN+1809500.gbk
101916000*195790341904Island text1.8102737.520425.836Neighbours41BLASTN+IslandViewer 1916000.gbk
112004653202887424222Island text1.3654330.015817.4016Neighbours41BLASTN+2004653.gbk
122124185*214874924565Island text1.5901231.899225.3709Neighbours41BLASTN+IslandViewer 2124185.gbk
132252329*227409821770Island text1.6877631.807327.5015Neighbours41BLASTN2252329.gbk
142297000*231809921100Island text1.8019831.473634.3061Neighbours41BLASTN+2297000.gbk
152376245*240318526941Island text2.2095934.478625.9573Neighbours41BLASTN+2376245.gbk
162810815283272221908Island text1.9926531.367829.278Neighbours41BLASTNIslandViewer 2810815.gbk
172894631293584741217Island text1.4701133.638936.7282Neighbours41BLASTN+2894631.gbk
182960000298209922100Island text1.5047331.201454.5072Neighbours51BLASTN2960000.gbk
193129174315220423031Island text1.8804932.605227.9165Neighbours41BLASTN+3129174.gbk
203155741318046024720Island text1.87129.95520.3618Neighbours41BLASTN+3155741.gbk
213250810326864117832Island text1.5765329.714930.5031Neighbours41BLASTNIslandViewer 3250810.gbk
223269010*329227823269Island text1.7198528.533329.4975Neighbours53BLASTN+3269010.gbk
233368000339029322294Island text1.7366130.02823.9676Neighbours41BLASTN+3368000.gbk
243509880354653836659Island text4.4507938.979124.7124Neighbours41BLASTN+IslandViewer 3509880.gbk
253692321*371595823638Island text2.6783334.64227.8861Neighbours41BLASTNIslandViewer 3692321.gbk
263720214*375380933596Island text1.7686833.099828.428Neighbours41BLASTN+IslandViewer 3720214.gbk
273762532378424921718Island text1.6117330.544721.4917Neighbours41BLASTN+IslandViewer 3762532.gbk
283905369393440829040Island text2.2803533.812124.1673Neighbours41BLASTN+IslandViewer 3905369.gbk
294001154402548424331Island text1.5171331.997834.1272Neighbours41BLASTN+4001154.gbk
304045794406762021827Island text1.6071134.001140.2627Neighbours51BLASTN+4045794.gbk
314150763417017019408Island text2.1828930.822927.1917Neighbours41BLASTN+4150763.gbk
324234932425567620745Island text1.7569730.301632.5375Neighbours51BLASTNIslandViewer 4234932.gbk
334463727449917835452Island text3.2099438.837916.0559Neighbours41BLASTN+IslandViewer 4463727.gbk