Pre_GI: OUP Neighbours

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Query: NC_010634:3269010 Yersinia pseudotuberculosis PB1/+, complete genome

D: 28.5333

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.

Number of Neighbours: 22




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015497:3614817Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome75.5392 %Subject ←→ Query26.8361
NC_006370:166000Photobacterium profundum SS9 chromosome 1, complete sequence76.4062 %Subject ←→ Query28.1736
NC_015224:279037Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,81.443 %Subject ←→ Query28.7938
NC_008149:3648139Yersinia pestis Nepal516, complete genome75.9957 %Subject ←→ Query29.4565
NC_008150:3711953Yersinia pestis Antiqua, complete genome76.5962 %Subject ←→ Query29.7483
NC_008150:2599661Yersinia pestis Antiqua, complete genome89.0012 %Subject ←→ Query29.7787
NC_006155:3040769Yersinia pseudotuberculosis IP 32953, complete genome76.5502 %Subject ←→ Query31.1041
NC_010634:2960000Yersinia pseudotuberculosis PB1/+, complete genome76.9455 %Subject ←→ Query31.2014
NC_010995:2547164*Cellvibrio japonicus Ueda107, complete genome76.1183 %Subject ←→ Query32.0273
NC_008149:2411161Yersinia pestis Nepal516, complete genome75.9712 %Subject ←→ Query32.2349
NC_009654:4716417Marinomonas sp. MWYL1, complete genome76.5135 %Subject ←→ Query32.6103
NC_010465:1724000Yersinia pseudotuberculosis YPIII, complete genome76.0846 %Subject ←→ Query32.6727
NC_013592:3397304Dickeya dadantii Ech586, complete genome75.1501 %Subject ←→ Query32.6808
NC_003143:2849377Yersinia pestis CO92, complete genome76.0601 %Subject ←→ Query33.8521
NC_010159:1861465Yersinia pestis Angola, complete genome75.9283 %Subject ←→ Query33.8947
NC_005810:2613456Yersinia pestis biovar Microtus str. 91001, complete genome76.0754 %Subject ←→ Query33.9433
NC_010465:1427170Yersinia pseudotuberculosis YPIII, complete genome78.5999 %Subject ←→ Query34.0046
NC_010995:1648897*Cellvibrio japonicus Ueda107, complete genome76.2194 %Subject ←→ Query34.0285
NC_015581:128350*Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome76.0815 %Subject ←→ Query34.2108
NC_013421:1143500Pectobacterium wasabiae WPP163, complete genome76.9761 %Subject ←→ Query36.4256
NC_010995:1139867Cellvibrio japonicus Ueda107, complete genome76.296 %Subject ←→ Query37.8817
NC_012962:1661683Photorhabdus asymbiotica, complete genome77.1661 %Subject Query40.4188