Pre_GI: OUP Neighbours

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Query: NC_010634:2960000 Yersinia pseudotuberculosis PB1/+, complete genome

D: 31.2014

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.

Number of Neighbours: 38




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010634:3269010*Yersinia pseudotuberculosis PB1/+, complete genome76.9455 %Subject ←→ Query28.5333
NC_015224:279037Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,79.4485 %Subject ←→ Query28.7938
NC_008149:3648139Yersinia pestis Nepal516, complete genome75.0674 %Subject ←→ Query29.4565
NC_012912:4737703Dickeya zeae Ech1591, complete genome76.2316 %Subject ←→ Query29.5142
NC_008150:3711953Yersinia pestis Antiqua, complete genome75.0858 %Subject ←→ Query29.7483
NC_008150:2599661Yersinia pestis Antiqua, complete genome75.1317 %Subject ←→ Query29.7787
NC_015968:204969*Enterobacter asburiae LF7a chromosome, complete genome76.3909 %Subject ←→ Query30.2205
NC_012880:1711062*Dickeya dadantii Ech703, complete genome76.152 %Subject ←→ Query30.2924
NC_008149:1221637Yersinia pestis Nepal516, complete genome76.155 %Subject ←→ Query30.5812
NC_012880:1127997*Dickeya dadantii Ech703, complete genome78.1036 %Subject ←→ Query30.9614
NC_006155:3040769Yersinia pseudotuberculosis IP 32953, complete genome94.8683 %Subject ←→ Query31.1041
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.7175 %Subject ←→ Query31.1345
NC_011149:3895921Salmonella enterica subsp. enterica serovar Agona str. SL483,77.5919 %Subject ←→ Query31.5601
NC_004088:1801819Yersinia pestis KIM, complete genome90.8058 %Subject ←→ Query31.8002
NC_004631:3841975Salmonella enterica subsp. enterica serovar Typhi Ty2, complete77.0864 %Subject ←→ Query32.0647
NC_010102:3919999Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,77.1507 %Subject ←→ Query32.0708
NC_003197:3971905Salmonella typhimurium LT2, complete genome77.4295 %Subject ←→ Query32.0829
NC_008149:2411161Yersinia pestis Nepal516, complete genome93.5662 %Subject ←→ Query32.2349
NC_011083:3985618Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,77.3346 %Subject ←→ Query32.4599
NC_003198:3855157Salmonella enterica subsp. enterica serovar Typhi str. CT18,77.5858 %Subject ←→ Query32.5632
NC_010465:1724000Yersinia pseudotuberculosis YPIII, complete genome92.1906 %Subject ←→ Query32.6727
NC_013592:3397304Dickeya dadantii Ech586, complete genome77.4387 %Subject ←→ Query32.6808
NC_010634:1565788Yersinia pseudotuberculosis PB1/+, complete genome77.6624 %Subject ←→ Query33.0113
NC_006155:1567306Yersinia pseudotuberculosis IP 32953, complete genome77.7788 %Subject ←→ Query33.2342
NC_012880:3645304Dickeya dadantii Ech703, complete genome75.962 %Subject ←→ Query33.3293
NC_003143:2849377Yersinia pestis CO92, complete genome94.2494 %Subject ←→ Query33.8521
NC_010159:1861465Yersinia pestis Angola, complete genome93.413 %Subject ←→ Query33.8947
NC_005810:2613456Yersinia pestis biovar Microtus str. 91001, complete genome93.9767 %Subject ←→ Query33.9433
NC_015224:3191000Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,84.7855 %Subject ←→ Query34.0665
NC_013592:3618248*Dickeya dadantii Ech586, complete genome77.9933 %Subject ←→ Query34.4581
NC_004547:843475*Erwinia carotovora subsp. atroseptica SCRI1043, complete genome75.1532 %Subject ←→ Query34.6881
NC_013421:1545386Pectobacterium wasabiae WPP163, complete genome77.9473 %Subject ←→ Query35.9253
NC_013421:1143500Pectobacterium wasabiae WPP163, complete genome78.1189 %Subject ←→ Query36.4256
NC_012962:3568046Photorhabdus asymbiotica, complete genome77.7911 %Subject ←→ Query37.813
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,77.3928 %Subject ←→ Query37.9381
NC_011080:3941909Salmonella enterica subsp. enterica serovar Newport str. SL254,78.1403 %Subject ←→ Query39.4334
NC_012962:1661683Photorhabdus asymbiotica, complete genome78.6642 %Subject ←→ Query40.4188
NC_014541:1165991Ferrimonas balearica DSM 9799 chromosome, complete genome75.4075 %Subject Query51.4043