Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009801: Escherichia coli E24377A, complete genome

NCBI: NC_009801

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: ETEC is the leading cause of traveler's diarrhea, characterized by a large volume of watery diarrhea. ETEC primarily colonizes the small intestine by way of the pili. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111921*3399422074Island text2.302534.891829.1646Neighbours41BLASTNIslandViewer 11921.gbk
2143426*16609922674Island text1.7524530.620726.142Neighbours41BLASTN+IslandViewer 143426.gbk
3995396101946824073Island text1.419930.684632.8542Neighbours41BLASTN+IslandViewer 995396.gbk
41296488*132313526648Island text2.4519434.191117.3545Neighbours41BLASTN+IslandViewer 1296488.gbk
51392696142187429179Island text2.4102440.161723.8845Neighbours41BLASTN+IslandViewer 1392696.gbk
61419324143859919276Island text1.6097730.085739.6821NeighboursBLASTN+IslandViewer 1419324.gbk
71678790170320124412Island text2.1283231.117218.9869Neighbours41BLASTN+IslandViewer 1678790.gbk
81756610177871522106Island text1.7788532.682630.3418Neighbours41BLASTN+IslandViewer 1756610.gbk
92159123218213823016Island text1.6208832.745621.0196Neighbours41BLASTN+IslandViewer 2159123.gbk
102193000221975526756Island text2.3947736.835520.4185Neighbours41BLASTN+IslandViewer 2193000.gbk
112276131230753131401Island text4.7667842.034821.923Neighbours41BLASTNIslandViewer 2276131.gbk
122639787266007120285Island text2.2236230.583320.8893Neighbours41BLASTN+IslandViewer 2639787.gbk
132898426*294876250337Island text3.1574437.441223.8494Neighbours41BLASTN+IslandViewer 2898426.gbk
143013838304465430817Island text3.4426241.294319.5055Neighbours41BLASTN+IslandViewer 3013838.gbk
153175714321109935386Island text5.4060543.323617.3751Neighbours41BLASTN+IslandViewer 3175714.gbk
163374501*339880324303Island text2.1042936.365336.6604Neighbours51BLASTN+IslandViewer 3374501.gbk
173511444352932517882Island text2.2809829.915523.724Neighbours41BLASTN+IslandViewer 3511444.gbk
183595001361359918599Island text1.7114329.322727.2079Neighbours41BLASTN+3595001.gbk
193956917397533818422Island text1.8273629.292322.4327Neighbours41BLASTN+3956917.gbk
204073968409617422207Island text1.7733133.135728.8318Neighbours41BLASTN4073968.gbk
214108179*413170423526Island text2.6384336.385216.6292Neighbours41BLASTNIslandViewer 4108179.gbk
224643000466340420405Island text1.5314232.929222.7762Neighbours41BLASTN+4643000.gbk
234882684490824525562Island text2.4614235.167521.9118Neighbours41BLASTN+IslandViewer 4882684.gbk