Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009656: Pseudomonas aeruginosa PA7 chromosome, complete genome

NCBI: NC_009656

Host Lineage: Pseudomonas aeruginosa; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Non-respiratory clinical isolate from Argentina. Opportunistic pathogen. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is an opportunistic human pathogen. While it rarely infects healthy individuals, immunocompromised patients, like burn victims, AIDS-, cancer- or cystic fibrosis-patients are at increased risk for infection with this environmentally versatile bacteria. It is an important soil bacterium with a complex metabolism capable of degrading polycyclic aromatic hydrocarbons, and producing interesting, biologically active secondary metabolites including quinolones, rhamnolipids, lectins, hydrogen cyanide, and phenazines. Production of these products is likely controlled by complex regulatory networks making Pseudomonas aeruginosa adaptable both to free-living and pathogenic lifestyles. The bacterium is naturally resistant to many antibiotics and disinfectants, which makes it a difficult pathogen to treat.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
144500*10559961100Island text5.0739638.862735.2523Neighbours11BLASTN+IslandViewer 44500.gbk
211539014666331274Island text2.6832627.77720.1323Neighbours11BLASTN+IslandViewer 115390.gbk
3475465*49818422720Island text3.6949525.824129.1716Neighbours11BLASTN+IslandViewer 475465.gbk
41994392*203927544884Island text2.7210926.600134.162Neighbours11BLASTN+IslandViewer 1994392.gbk
52422083244533023248Island text8.1939548.814645.8641Neighbours11BLASTNIslandViewer 2422083.gbk
62512733*254795035218Island text2.2518223.19218.8956Neighbours11BLASTN+IslandViewer 2512733.gbk
72663387*268692523539Island text3.2852129.292127.6373Neighbours11BLASTN+IslandViewer 2663387.gbk
82801885284726145377Island text3.8603627.97336.7747Neighbours11BLASTN+IslandViewer 2801885.gbk
93127240317645449215Island text4.0303139.580241.0542Neighbours11BLASTN+IslandViewer 3127240.gbk
103733913375688322971Island text3.0217829.234924.2525Neighbours11BLASTN+3733913.gbk
113817261384049723237Island text1.5098623.40120.9587Neighbours11BLASTNIslandViewer 3817261.gbk
123869281389409924819Island text1.8137721.066415.1115Neighbours11BLASTN+IslandViewer 3869281.gbk
134079319410366224344Island text2.366726.347823.1258Neighbours11BLASTNIslandViewer 4079319.gbk
1445274574658957131501Island text1.6343826.055429.4725Neighbours11BLASTN+IslandViewer 4527457.gbk
155185704*520821922516Island text2.0787822.716932.1676Neighbours11BLASTN+IslandViewer 5185704.gbk
165297000*532212125122Island text3.5559228.988335.8326Neighbours11BLASTN+IslandViewer 5297000.gbk
175475540*550472829189Island text1.9915922.130432.3426Neighbours11BLASTN+IslandViewer 5475540.gbk
185505413553759932187Island text2.6271726.749242.509Neighbours11BLASTN+IslandViewer 5505413.gbk
196224221*626282438604Island text2.566626.96324.3601Neighbours11BLASTN+IslandViewer 6224221.gbk