Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009513: Lactobacillus reuteri F275, complete genome

NCBI: NC_009513

Host Lineage: Lactobacillus reuteri; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain (JCM 1112, F275) is the type strain for the species. It is a human isolate, which is unable to colonize the intestinal tract of mice. Normal gut bacterium. They are commonly found in the oral, vaginal, and intestinal tracts of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained. These cultures produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also used as a starter molecule for complex organic molecule syntheses. Lactobacillus reuteri is a member of the normal microbial community of the gut in humans and animals. This organism produces antibiotic compounds, such as reutericin and reuterin, which have inhibitory effects on pathogenic microorganisms.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1169146*19195222807Island text2.5190330.516443.9287Neighbours21BLASTN+169146.gbk
2303043*32423321191Island text1.8719627.035338.0395Neighbours21BLASTN+303043.gbk
3618000*64445826459Island text2.3943232.432750.1514Neighbours21BLASTN618000.gbk
487083788981818982Island text1.5786522.020936.9046Neighbours21BLASTN+870837.gbk
51065704*108692121218Island text1.6249624.843432.7674Neighbours21BLASTN+1065704.gbk
61184000*120196817969Island text1.8694321.087735.5707Neighbours21BLASTN+IslandViewer 1184000.gbk
71363987*138399520009Island text2.6352726.883940.2761Neighbours21BLASTN+1363987.gbk