Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008309: Haemophilus somnus 129PT, complete genome

NCBI: NC_008309

Host Lineage: Histophilus somni; Histophilus; Pasteurellaceae; Pasteurellales; Proteobacteria; Bacteria

General Information: This strain is an asymptomatic carrier strain that was serum-resistant. Causes disease in cattle. A group of organisms that are either obligate parasites or commensal organisms found in animal mucous membranes. Almost all species require the presence of important growth factors found in the blood of their hosts, including either X factor (protoporphyrin IX or heme) or V factor (nicotinamide adenine dinucleotide (NAD or NADP)). This organism is a major cause of disease in feedlot cattle. It causes constriction of blood vessels supplying major organs, restricting blood supply which leads to reduced oxygen delivery, and leads to tissue damage and death. The diseases that result are pneumonia, arthritis, myocarditis (inflammation of heart muscle), and reproductive problems resulting in the loss of millions of dollars in animals each year.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
119055022259932050Island text2.2271428.879145.1872Neighbours21BLASTN+190550.gbk
238559240909923508Island text2.2778429.068647.3346Neighbours21BLASTN385592.gbk
3502983*52926826286Island text2.676226.815242.7448Neighbours21BLASTN+502983.gbk
4555680*57929723618Island text1.5712723.057534.6875Neighbours21BLASTN+IslandViewer 555680.gbk
584207286931527244Island text2.2271828.53344.2054Neighbours21BLASTN+842072.gbk
61155218117824923032Island text1.916534.215450.5812Neighbours21BLASTN+1155218.gbk
71200245*121859918355Island text2.7573323.163936.8863Neighbours21BLASTN1200245.gbk
81289370131490625537Island text3.0965825.582642.1234Neighbours21BLASTN+IslandViewer 1289370.gbk
91553399158822334825Island text1.6102826.024742.3751Neighbours21BLASTN+1553399.gbk
101628939*165295524017Island text2.379832.982745.4353Neighbours21BLASTN1628939.gbk
111827809185114023332Island text2.1865426.838940.9812Neighbours21BLASTN1827809.gbk
121851189*187944728259Island text1.9423531.820147.9954Neighbours21BLASTN1851189.gbk