Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008260: Alcanivorax borkumensis SK2, complete genome

NCBI: NC_008260

Host Lineage: Alcanivorax borkumensis; Alcanivorax; Alcanivoracaceae; Oceanospirillales; Proteobacteria; Bacteria

General Information: This bacterium was isolated from a seawater sediment sample in the North Sea. The species is able to use Mihagol-S (C14,15-n-alkanes) as a principal carbon source. Using n-alkanes as a sole carbon source causes the strains to produce extracellular and membrane-bound surface-active glucose lipids. Phenotypic analysis showed a restricted nutritional profile, high halotolerance, the absence of fermentative metabolism, and a low G+C content. This, in combination with a 16S phylogenetic study, allowed the placing of this organism into a new genus.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1125500*14520219703Island text1.5877630.575144.21Neighbours13BLASTN125500.gbk
218726920998322715Island text1.7340233.605647.2725Neighbours14BLASTN187269.gbk
3228475*24759919125Island text1.9224131.930953.8829Neighbours14BLASTN+IslandViewer 228475.gbk
4497855*51915621302Island text1.6878431.875451.375Neighbours14BLASTN497855.gbk
51015447103954324097Island text2.4415341.694348.11Neighbours14BLASTNIslandViewer 1015447.gbk
61044440*106265118212Island text1.9495630.79156.0696Neighbours14BLASTN+1044440.gbk
71885969*190810422136Island text1.5604333.086133.1222Neighbours11BLASTN1885969.gbk
82021162*204220421043Island text1.5412329.818235.8753Neighbours45BLASTN+IslandViewer 2021162.gbk
92142311216901926709Island text2.0523337.679848.2824Neighbours14BLASTN+2142311.gbk
102340824*238894248119Island text1.7446733.185546.5541Neighbours14BLASTN+IslandViewer 2340824.gbk
112442000246496022961Island text1.4536629.821351.4496Neighbours14BLASTN+2442000.gbk
122961291298426722977Island text1.538829.602454.6291Neighbours14BLASTN+2961291.gbk
132992813301367420862Island text1.6138831.393950.8503Neighbours14BLASTN2992813.gbk
143053775307159917825Island text1.6267628.848534.8703Neighbours310BLASTNIslandViewer 3053775.gbk