Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_000913: Escherichia coli K12, complete genome

NCBI: NC_000913

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1144577*16459920023Island text1.6188829.979325.8594Neighbours41BLASTN+IslandViewer PAI DB144577.gbk
227207130179729727Island text1.8570536.904316.01Neighbours41BLASTN+IslandViewer 272071.gbk
3303719*32647122753Island text1.801229.891220.24Neighbours41BLASTN+IslandViewer 303719.gbk
4558920*58509926180Island text1.9767934.612422.2833Neighbours41BLASTN+IslandViewer PAI DB558920.gbk
51087062*110699919938Island text1.5522628.410738.7623Neighbours41BLASTN+IslandViewer 1087062.gbk
61188999*122144532447Island text1.9153333.14922.4924Neighbours41BLASTN+IslandViewer 1188999.gbk
71404000*142700823009Island text1.6369930.961536.0582Neighbours41BLASTN+IslandViewer 1404000.gbk
81517051154061423564Island text1.5284531.128431.971Neighbours41BLASTN+IslandViewer 1517051.gbk
91570431159611025680Island text1.9570531.048922.1797Neighbours41BLASTN+IslandViewer 1570431.gbk
101625500*165193926440Island text1.8130234.637522.7992Neighbours41BLASTN+IslandViewer 1625500.gbk
112028472*205003821567Island text1.5894528.467518.3457Neighbours41BLASTNIslandViewer 2028472.gbk
122042935*206659923665Island text1.596929.333432.2025Neighbours41BLASTN+IslandViewer 2042935.gbk
132092559212109928541Island text3.1992939.079223.8319Neighbours41BLASTN+IslandViewer 2092559.gbk
142180855*220193321079Island text1.5603127.951726.3126Neighbours41BLASTNIslandViewer 2180855.gbk
152373984239819324210Island text1.6081933.645416.9387Neighbours41BLASTNIslandViewer 2373984.gbk
162455037*248136126325Island text1.9445529.053617.9619Neighbours41BLASTN+IslandViewer 2455037.gbk
172746886*280151454629Island text2.1660735.658924.2882Neighbours41BLASTN+IslandViewer 2746886.gbk
182873443289220118759Island text1.4707629.450429.1448Neighbours41BLASTNIslandViewer 2873443.gbk
192975659*300672831070Island text4.6234440.448717.3734Neighbours41BLASTN+IslandViewer 2975659.gbk
203176000*319898722988Island text1.928.559728.7124Neighbours41BLASTN+IslandViewer PAI DB3176000.gbk
213256307*327821621910Island text1.9524329.882130.5305Neighbours41BLASTN+3256307.gbk
223624826*366560340778Island text1.6047929.316921.0732Neighbours41BLASTN+IslandViewer 3624826.gbk
233786124*381459928476Island text3.365538.940119.0372Neighbours41BLASTNIslandViewer 3786124.gbk
244159090*417760618517Island text1.4975636.639750.0213Neighbours51BLASTN+4159090.gbk
254307471432826120791Island text1.5150330.325923.1575Neighbours41BLASTN+IslandViewer 4307471.gbk
264462782*448642323642Island text1.6406727.957823.8701Neighbours41BLASTN+IslandViewer 4462782.gbk
274494773451470019928Island text1.5705330.844225.7786Neighbours41BLASTN+IslandViewer PAI DB4494773.gbk
284528278455238424107Island text2.0935632.169823.0526Neighbours41BLASTN+IslandViewer PAI DB4528278.gbk