Pre_GI Gene

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Host: NC_011369 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011369:1135592 Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Nitrogen-fixing plant symbiont. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of American and African origin used in farming, and is therefore one of the most important clover inoculants but is incompatible with Mediterranean perennial clovers, such as those nodulated by the dissimilar strain WSM1325. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
11355921136473882hypothetical proteinBLASTP
11364741137250777arginyl-tRNA-protein transferaseQuickGO ontologyBLASTP
11374551137913459RDD domain-containing proteinQuickGO ontology
113809411391071014delta-aminolevulinic acid dehydrataseQuickGO ontologyBLASTP
11392951139765471hypothetical protein
11398951140410516MarR family transcriptional regulatorQuickGO ontologyBLASTP
11406201141078459hypothetical protein
11412441141528285hypothetical protein
11416111141865255hypothetical protein
11418551142079225hypothetical protein
11426401142927288hypothetical protein
11432591143432174hypothetical protein
11435771143810234hypothetical protein
11438121144021210hypothetical protein
11442851144761477hypothetical proteinBLASTP
11454161145883468hypothetical protein
11459231146408486hypothetical protein
11464411146776336hypothetical proteinBLASTP
11467441147367624hypothetical protein
11474581147817360endodeoxyribonuclease RusAQuickGO ontologyBLASTP
11481241148354231hypothetical protein
11483441148829486hypothetical protein
11488331149228396hypothetical protein
11492791149497219hypothetical protein
11496541149815162hypothetical protein
11498311150247417hypothetical protein
11502401150776537hypothetical proteinBLASTP
11507731151141369hypothetical protein
11511411151473333hypothetical proteinBLASTP
11517541151867114hypothetical protein
11524381153058621hypothetical protein
11532851153776492hypothetical proteinBLASTP
11538991154300402hypothetical protein
115429711555711275phage terminase large subunit PBSX familyQuickGO ontologyBLASTP
11556291155820192hypothetical protein
115582711576651839hypothetical proteinBLASTP
11576651158399735hypothetical protein
115841911595311113hypothetical protein
11595951160230636hypothetical protein
116023011620501821hypothetical protein
11620551162960906hypothetical protein
11630261163874849hypothetical protein
116387411651421269hypothetical proteinBLASTP
116514211671572016hypothetical proteinBLASTP
11672721167736465hypothetical protein
116773911699882250glycoside hydrolaseQuickGO ontologyBLASTP
11700171170916900hypothetical protein
11709161171374459hypothetical protein
11713841171698315hypothetical protein
11716981172099402hypothetical proteinBLASTP
11722541172469216hypothetical protein
11724691172693225hypothetical protein
11736641174563900hypothetical proteinBLASTP
117466611761801515type IV secretory pathway VirD4 protein-like proteinQuickGO ontologyBLASTP
117617511775331359hypothetical proteinBLASTP
11776821178491810hypothetical protein
11786291178991363hypothetical protein
11789941179365372hypothetical protein
11795521179857306hypothetical protein
11798501180080231hypothetical protein
118007311811791107integrase family proteinQuickGO ontologyBLASTP
11812561181744489hypothetical proteinBLASTP
118204411840742031PA-phosphatase-like phosphoesteraseQuickGO ontologyBLASTP
11840881184639552PA-phosphatase-like phosphoesteraseQuickGO ontologyBLASTP
118469311859221230major facilitator superfamily proteinQuickGO ontologyBLASTP
11859241186442519ChrB domain-containing proteinQuickGO ontologyBLASTP
118704011883411302peptidoglycan-binding proteinQuickGO ontologyBLASTP
118855711898551299serine hydroxymethyltransferaseQuickGO ontologyBLASTP
11898651190341477NrdR family transcriptional regulatorQuickGO ontologyBLASTP
119034511915591215riboflavin biosynthesis protein RibDQuickGO ontologyBLASTP
11915591192170612riboflavin synthase subunit alphaQuickGO ontologyBLASTP
11922091193078870glucose-1-phosphate thymidylyltransferaseQuickGO ontologyBLASTP
11930891193976888dTDP-4-dehydrorhamnose reductaseQuickGO ontologyBLASTP