Pre_GI Gene

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Host: NC_014323 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_014323:961825 Herbaspirillum seropedicae SmR1 chromosome, complete genome

Host Lineage: Herbaspirillum seropedicae; Herbaspirillum; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Root-associated nitrogen-fixing bacterium. Herbaspirillum seropedicae is an endophitic nitrogen-fixing beta-Proteobacteria found associated with important crops such as sugarcane, wheat, maize, rice and sorghum. It is non-phytopathogenic and produces interesting biotechnological products such as polybetaalkanoates and cyanophycin. Herbaspirillum seropedicae was isolated from the roots of rice plants, and is member of a group of free-living soil bacteria known to promote plant growth. The yields of rice and sorghum were significantly increased when grown in soil inoculated with Herbaspirillum seropedicae.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
96182596203721330S ribosomal protein S21QuickGO ontologyBLASTP
962336962782447hypothetical proteinBLASTP
9628329646281797DNA primaseQuickGO ontologyBLASTP
964636965100465hypothetical protein
9651409676922553RNA polymerase sigma-70 factor transcription regulator proteinQuickGO ontologyBLASTP
96774896782679tRNA-MetQuickGO ontologyBLASTP
968059968355297transmembrane proteinQuickGO ontologyBLASTP
968359968994636hypothetical protein
969060969494435hypothetical proteinBLASTP
969545970015471hypothetical protein
970186971163978site-specific phage recombinaseintegraseQuickGO ontologyBLASTP
971320971703384hypothetical protein
9718439738942052bacteriophage replication A proteinQuickGO ontologyBLASTP
974612974872261transcription activator transcription regulator proteinQuickGO ontologyBLASTP
974863975060198hypothetical protein
975053975295243hypothetical protein
975609976046438DNA-binding repressor transcription regulator proteinQuickGO ontologyBLASTP
976168976833666phage-encoded membrane proteinQuickGO ontology
9768349780631230bacteriophage-related tail D proteinQuickGO ontologyBLASTP
978063978590528bacteriophage P2 phage-related tail U proteinQuickGO ontologyBLASTP
9786049812282625bacteriophage-related tail transmembrane proteinQuickGO ontologyBLASTP