Pre_GI Gene

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Host: NC_014323 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_014323:625155 Herbaspirillum seropedicae SmR1 chromosome, complete genome

Host Lineage: Herbaspirillum seropedicae; Herbaspirillum; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Root-associated nitrogen-fixing bacterium. Herbaspirillum seropedicae is an endophitic nitrogen-fixing beta-Proteobacteria found associated with important crops such as sugarcane, wheat, maize, rice and sorghum. It is non-phytopathogenic and produces interesting biotechnological products such as polybetaalkanoates and cyanophycin. Herbaspirillum seropedicae was isolated from the roots of rice plants, and is member of a group of free-living soil bacteria known to promote plant growth. The yields of rice and sorghum were significantly increased when grown in soil inoculated with Herbaspirillum seropedicae.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
6251556271101956aspartate tRNAAsnGlu-tRNAGln amidotransferase subunit A-like proteinQuickGO ontologyBLASTP
6271336286291497N-acyl-D-glutamate deacylaseQuickGO ontologyBLASTP
6286626299061245major facilitator superfamily permeaseQuickGO ontologyBLASTP
630074630961888transcription regulator proteinQuickGO ontologyBLASTP
630986631981996Zn-dependent hydrolaseQuickGO ontologyBLASTP
632110632484375transcription regulator proteinQuickGO ontologyBLASTP
632541633146606SAM-dependent methyltransferaseQuickGO ontologyBLASTP
633230634102873hypothetical proteinBLASTP
634325634693369hypothetical proteinBLASTP
6346966359161221hypothetical proteinBLASTP
6364956377001206ammonium transporter transmembrane proteinQuickGO ontologyBLASTP
6380546396821629alkaline phosphatase DQuickGO ontologyBLASTP
639729640526798transcription regulator proteinQuickGO ontologyBLASTP
640650641375726short chain dehydrogenasereductase family proteinQuickGO ontologyBLASTP
6414736427591287major facilitator superfamily proteinQuickGO ontologyBLASTP
6430026437367353-oxoacyl-acyl-carrier protein reductaseQuickGO ontologyBLASTP
64374864427552824-dihydroxyacetophenone dioxygenaseQuickGO ontologyBLASTP
644592645491900LysR family transcription regulator proteinQuickGO ontologyBLASTP
645540646382843hypothetical proteinBLASTP
646487646903417membrane proteinQuickGO ontologyBLASTP
6470806483361257N6-adenine-specific DNA methylaseQuickGO ontologyBLASTP
6484366490416062-hydroxychromene-2-carboxylate isomeraseQuickGO ontologyBLASTP
649112649537426inner membrane proteinQuickGO ontologyBLASTP
6495836508511269gamma-glutamyl phosphate reductaseQuickGO ontologyBLASTP