Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:1152188 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
11521881152730543peroxiredoxinQuickGO ontologyBLASTP
11527391153176438transcriptional regulator MarR familyQuickGO ontologyBLASTP
11531731153712540protein-tyrosine phosphataseQuickGO ontologyBLASTP
115380711557321926carbohydrate binding family 6QuickGO ontologyBLASTP
11558221156604783Thioredoxin domain proteinQuickGO ontologyBLASTP
11566861157180495hypothetical protein
11575981157900303hypothetical protein
11579381158255318hypothetical protein
11584351158896462hypothetical protein
115910611603621257DNA-cytosine methyltransferaseQuickGO ontologyBLASTP
11604341161255822hypothetical protein
11613891162093705hypothetical protein
11620901162326237transcriptional regulator XRE familyQuickGO ontologyBLASTP
11624651162779315hypothetical protein
11628581163802945hypothetical proteinBLASTP
11638101164454645hypothetical proteinBLASTP
11645081164816309hypothetical proteinBLASTP
11651711165620450hypothetical protein
11655801165996417transcriptional regulator XRE familyQuickGO ontologyBLASTP
11661661167059894DNA-binding domain-containing proteinQuickGO ontologyBLASTP
11672281167581354hypothetical protein
116778111693191539transcriptional regulatorQuickGO ontologyBLASTP
11693481169497150BLASTP
116951211708551344NaH antiporter NhaC-like proteinQuickGO ontologyBLASTP
11710111171454444hypothetical protein
11715391172177639hypothetical protein
11722921173173882translation elongation factor TsQuickGO ontologyBLASTP
1173175117391574130S ribosomal protein S2QuickGO ontologyBLASTP
11742961175177882electron transfer flavoprotein subunit alphabetaQuickGO ontologyBLASTP
117518111762061026electron transfer flavoprotein subunit alphaQuickGO ontologyBLASTP
117621211779241713acyl-CoA dehydrogenaseQuickGO ontologyBLASTP
117819411803202127excinuclease ATPase subunit-like proteinQuickGO ontologyBLASTP
118030211817111410radical SAM proteinQuickGO ontologyBLASTP
11824481182804357hypothetical protein
11828911183112222hypothetical protein
11831091183513405twitching motility protein PilTQuickGO ontologyBLASTP
11837951183986192BLASTP
11842251184461237hypothetical protein
11846741185549876aminoglycoside phosphotransferaseQuickGO ontologyBLASTP
11855521186181630N-acetyltransferase GCN5QuickGO ontologyBLASTP
118633811876841347nucleotide sugar dehydrogenaseQuickGO ontologyBLASTP
118769411887881095NAD-dependent epimerasedehydrataseQuickGO ontologyBLASTP
11888701189652783WecBTagACpsF family glycosyl transferaseQuickGO ontologyBLASTP
118965311914281776haloacid dehalogenase domain-containing protein hydrolaseQuickGO ontologyBLASTP
119144411925921149hypothetical protein
119274811941721425polysaccharide biosynthesis proteinQuickGO ontologyBLASTP