Pre_GI Gene

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Host: NC_012917 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:4328463 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
432846343303701908ABC transporter relatedQuickGO ontologyBLASTP
43304354331037603Lysine exporter protein LYSEYGGAQuickGO ontologyBLASTP
433114443321481005alphabeta hydrolase fold proteinQuickGO ontologyBLASTP
43321504332386237hypothetical proteinBLASTP
43325124333381870PhosphoribulokinaseQuickGO ontologyBLASTP
43334954333902408OsmC family proteinQuickGO ontologyBLASTP
43342764334908633transcriptional regulator CrpFnr familyQuickGO ontologyBLASTP
433502643362521227succinylornithine transaminase familyQuickGO ontologyBLASTP
43363724336947576glutamine amidotransferase of anthranilate synthaseQuickGO ontologyBLASTP
43370074337606600transcriptional regulator TetR familyQuickGO ontologyBLASTP
433781343388771065Saccharopine dehydrogenaseQuickGO ontologyBLASTP
433946543405891125Pectate lyaseAmb allergenQuickGO ontologyBLASTP
434125043423741125Pectate lyaseAmb allergenQuickGO ontologyBLASTP
434299543441191125Pectate lyaseAmb allergenQuickGO ontologyBLASTP
434428843455831296pectate lyaseQuickGO ontologyBLASTP
43458894346461573peptidyl-prolyl cis-trans isomerase cyclophilin typeQuickGO ontologyBLASTP
43466684347477810ABC transporter relatedQuickGO ontologyBLASTP
43474894348376888ABC transporter relatedQuickGO ontologyBLASTP
43483484349271924binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
434926843503081041binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
435044143520511611extracellular solute-binding protein family 5QuickGO ontologyBLASTP