Pre_GI: BLASTP Hits

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Query: NC_012917:4328463:4332512 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 4332512, End: 4333381, Length: 870

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008817:709370:718636718636719535900Prochlorococcus marinus str. MIT 9515, complete genomephosphoribulokinase4e-80297
NC_009720:2143124:216560121656012166476876Xanthobacter autotrophicus Py2, complete genomephosphoribulokinase2e-78292
NC_014931:3886405:389639638963963897310915Variovorax paradoxus EPS chromosome, complete genomePhosphoribulokinase1e-65250
NC_007404:2048000:204915120491512050131981Thiobacillus denitrificans ATCC 25259, complete genomephosphoribulokinase-like protein8e-62237
NC_015581:1891409:189140918914091892341933Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomephosphoribulokinase7e-60230
NC_013741:1304000:130917013091701310126957Archaeoglobus profundus DSM 5631, complete genomephosphoribulokinase/uridine kinase7e-0858.2
NC_013926:1270173:127230312723031273268966Aciduliprofundum boonei T469 chromosome, complete genomephosphoribulokinase/uridine kinase6e-0755.1