Pre_GI: BLASTP Hits

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Query: NC_012917:4328463:4344288 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 4344288, End: 4345583, Length: 1296

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007912:2930063:2930063293006329313401278Saccharophagus degradans 2-40, complete genomepectate lyase7e-73275
NC_007498:1774859:1778144177814417794961353Pelobacter carbinolicus DSM 2380, complete genomepectate lyase5e-56219
NC_007498:1774859:1774859177485917779543096Pelobacter carbinolicus DSM 2380, complete genomepectate lyase protein6e-53208
NC_010997:910938:9200639200639213011239Rhizobium etli CIAT 652 plasmid pC, complete sequenceputative pectate lyase protein3e-44179
NC_016935:2503071:2528230252823025339025673Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein5e-36152
NC_015690:1967244:1995344199534419985653222Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein7e-36152
NC_020409:77414:8288082880841811302Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeputative pectate lyase protein8e-34145
NC_007912:2930063:2935602293560229379202319Saccharophagus degradans 2-40, complete genomehypothetical protein8e-32138
NC_016815:1085462:1091967109196710934481482Sinorhizobium fredii HH103 plasmid pSfHH103e complete sequenceputative pectate lyase9e-30131
NC_014657:2236193:2245209224520922498374629Caldicellulosiruptor owensensis OL chromosome, complete genomepectinesterase1e-29131
NC_018000:3371829:3383453338345333849341482Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein4e-27122
NC_015177:391774:3942653942653958871623Pedobacter saltans DSM 12145 chromosome, complete genomehypothetical protein3e-26119
NC_014393:1221000:1221291122129112230181728Clostridium cellulovorans 743B chromosome, complete genomeDockerin type 13e-1997.1
NC_015510:2487617:2487617248761724893681752Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeputative outer membrane adhesin-like protein1e-1688.2