Pre_GI Gene

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Host: NC_012917 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:2641000 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
264108326426361554methyl-accepting chemotaxis sensory transducer with PasPac sensorQuickGO ontologyBLASTP
264275726437641008D-isomer specific 2-hydroxyacid dehydrogenase NAD-bindingQuickGO ontologyBLASTP
26439082644198291hypothetical proteinBLASTP
26444952644833339ferredoxin 2Fe-2SQuickGO ontologyBLASTP
26448662645051186hypothetical protein
26455692645841273hypothetical proteinBLASTP
2646238264631275
26463292646613285transposase IS3IS911 family proteinQuickGO ontologyBLASTP
26476722648025354hypothetical proteinBLASTP
26480322648838807ferredoxin 2Fe-2SQuickGO ontologyBLASTP
26488682649014147hypothetical protein
26496632649905243hypothetical protein
26499022650222321hypothetical protein
26502452650799555BLASTP
26509642651770807uncharacterized phage proteinQuickGO ontologyBLASTP
26519112652723813hypothetical protein
265307826548651788hypothetical proteinBLASTP
26551882655835648hypothetical proteinBLASTP
26558322655954123BLASTP
26560862656853768integrase family proteinQuickGO ontologyBLASTP
26569022657837936PP-loop domain proteinQuickGO ontologyBLASTP
26579492658125177hypothetical protein
26586882659671984Mg2 transporter protein CorA family proteinQuickGO ontologyBLASTP
265978326613991617extracellular solute-binding protein family 5QuickGO ontologyBLASTP
26615642662283720peptidase M14 carboxypeptidase AQuickGO ontologyBLASTP
26623632662866504Redoxin domain proteinQuickGO ontologyBLASTP
26632352664014780hypothetical protein
266404526661592115Hemolysin-type calcium-binding regionQuickGO ontologyBLASTP