Pre_GI: BLASTP Hits

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Query: NC_012917:2641000:2650245 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 2650245, End: 2650799, Length: 555

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:3262000:328064432806443281489846Pseudomonas poae RE*1-1-14, complete genomepeptidoglycan binding domain-containing protein3e-37154
NC_014722:193500:194337194337195143807Burkholderia rhizoxinica HKI 454, complete genomehypothetical protein3e-35147
NC_016816:1823127:183175718317571832614858Pantoea ananatis LMG 5342, complete genomepeptidoglycan-binding domain 1 protein1e-24112
NC_012912:647369:658934658934659785852Dickeya zeae Ech1591, complete genomePeptidoglycan-binding domain 1 protein1e-24112
NC_010803:2474554:247529824752982476182885Chlorobium limicola DSM 245, complete genomeLytic transglycosylase catalytic7e-2096.7
NC_015590:1398157:1400416140041614016151200Sinorhizobium meliloti AK83 chromosome 1, complete sequencepeptidoglycan-binding domain 1 protein5e-1890.5
NC_009802:114749:1550271550271578672841Campylobacter concisus 13826, complete genomeDNA-directed RNA polymerase beta' chain5e-1787.4
NC_016609:2951301:297650629765062977087582Niastella koreensis GR20-10 chromosome, complete genomehypothetical protein8e-1476.6
NC_012969:2136243:2224019222401922253501332Methylovorus glucosetrophus SIP3-4 chromosome, complete genomepeptidoglycan-binding LysM9e-1373.2
NC_017075:2689014:2699672269967227006971026Rubrivivax gelatinosus IL144, complete genomehypothetical protein4e-1064.3
NC_017075:2689014:269416226941622695052891Rubrivivax gelatinosus IL144, complete genomehypothetical protein8e-1063.5
NC_012969:2136243:222288922228892223299411Methylovorus glucosetrophus SIP3-4 chromosome, complete genomepeptidoglycan-binding domain-containing protein6e-0960.5