Pre_GI Gene

Some Help

Host: NC_012917 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:1506083 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
150608315079181836AsmA family proteinQuickGO ontologyBLASTP
150818215095341353anaerobic c4-dicarboxylate antiporter DcuC familyQuickGO ontologyBLASTP
150961115111971587Integral membrane protein TerCQuickGO ontologyBLASTP
15112561511459204hypothetical protein
151194215130211080undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferaseQuickGO ontologyBLASTP
151314715142831137polysaccharide export proteinQuickGO ontologyBLASTP
15142921514726435protein tyrosine phosphataseQuickGO ontologyBLASTP
151474315169172175capsular exopolysaccharide familyQuickGO ontologyBLASTP
15170601517935876glucose-1-phosphate thymidylyltransferaseQuickGO ontologyBLASTP
15179401518335396WxcM domain protein domain proteinQuickGO ontologyBLASTP
15183881519299912pyridoxal phosphate-dependent enzyme-like proteinQuickGO ontologyBLASTP
15193101519807498transferase family hexapeptide motifQuickGO ontologyBLASTP
15199121520850939hypothetical proteinBLASTP
152084715219591113Glutamine--scyllo-inositol transaminaseQuickGO ontologyBLASTP
152195615232091254polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
15232541524105852glycosyl transferase family 2QuickGO ontologyBLASTP
152415715253711215hypothetical protein
15253641525855492Acetyltransferase isoleucine patch superfamily-like proteinQuickGO ontologyBLASTP
152595115270391089glycosyl transferase group 1QuickGO ontologyBLASTP
152703615280911056glycosyl transferase group 1QuickGO ontologyBLASTP
152809115293711281glycosyl transferase group 1QuickGO ontologyBLASTP
152939115305001110GDP-mannose 46-dehydrataseQuickGO ontologyBLASTP
15305031531465963NAD-dependent epimerasedehydrataseQuickGO ontologyBLASTP
15314671531925459NUDIX hydrolaseQuickGO ontologyBLASTP
153193515333381404mannose-1-phosphate guanylyltransferasemannose-6-phosphate isomeraseQuickGO ontologyBLASTP
15333401534086747glycosyl transferase family 2QuickGO ontologyBLASTP
153409315354661374PhosphomannomutaseQuickGO ontologyBLASTP
15355871535718132hypothetical protein
15357511536647897Nucleotidyl transferaseQuickGO ontologyBLASTP
1536878153828414076-phosphogluconate dehydrogenase decarboxylatingQuickGO ontologyBLASTP
15386571538995339hypothetical protein
15390711539748678putative lipoproteinQuickGO ontologyBLASTP
15397581540540783hypothetical proteinBLASTP
154053715426602124hypothetical proteinBLASTP
15430501543607558chorismate mutaseQuickGO ontologyBLASTP
154362715452491623Peptidase S53 propeptideQuickGO ontologyBLASTP
154554515469691425glycoside hydrolase family 1QuickGO ontologyBLASTP