Pre_GI Gene

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Host: NC_011742 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011742:1177946 Escherichia coli S88 chromosome, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia coli S88 is a serotype O45:K1 strain isolated from a case of neonatal meningitis. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
11779461178587642hypothetical proteinBLASTP
117862311797291107tRNA-specific 2-thiouridylase MnmAQuickGO ontologyBLASTP
11797831180244462bifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolaseQuickGO ontologyBLASTP
1180254118090765423S rRNA pseudouridine synthase EQuickGO ontologyBLASTP
118107911823291251isocitrate dehydrogenaseQuickGO ontologyBLASTP
118244311835851143phage integraseQuickGO ontologyBLASTP
11835751183811237excisionaseQuickGO ontologyBLASTP
11839511184190240hypothetical proteinBLASTP
11841741184503330hypothetical proteinBLASTP
11845151184682168hypothetical protein
11849151185097183hypothetical proteinBLASTP
11851081185299192hypothetical proteinBLASTP
11852721185460189hypothetical proteinBLASTP
11854511186131681exonuclease from phage originQuickGO ontologyBLASTP
11861281186913786Recombination protein bet from phage originQuickGO ontologyBLASTP
11869191187215297host-nuclease inhibitor protein Gam of bacteriophageQuickGO ontologyBLASTP
11874031187567165Regulatory protein CIIIQuickGO ontologyBLASTP
11876401188008369ssDNA-binding proteinQuickGO ontologyBLASTP
11881911188391201Restriction inhibitor protein ral Antirestriction proteinQuickGO ontologyBLASTP
11886051189186582Superinfection exclusion protein BQuickGO ontologyBLASTP
11894471189668222hypothetical protein
11898601190012153hypothetical protein
11899121190664753hypothetical proteinBLASTP
11912581191959702Repressor protein CI from phage originQuickGO ontologyBLASTP
11918581192244387repressor proteinQuickGO ontologyBLASTP
11923861192682297Regulatory protein CII from phage originQuickGO ontologyBLASTP
1192627119270377OopQuickGO ontology
11927151193179465BLASTP
11930561193547492BLASTP
11935441194245702replication protein P of bacteriophageQuickGO ontologyBLASTP
11942421194532291Ren protein from phage originQuickGO ontologyBLASTP
11945881195046459recombination protein ninB from phage originQuickGO ontologyBLASTP
11949831195570588DNA N-6-adenine-methyltransferase from phage originQuickGO ontologyBLASTP
11957041196087384hypothetical proteinBLASTP
11962941196656363endodeoxyribonuclease RUSQuickGO ontologyBLASTP
11968791197262384antitermination protein QQuickGO ontologyBLASTP
119745111985931143outer membrane porinQuickGO ontologyBLASTP
11991221199337216phage lysis protein S DLP12 prophageQuickGO ontologyBLASTP
11993371199834498lysozyme DLP12 prophageQuickGO ontologyBLASTP
11998311200292462murein endopeptidase DLP12 prophageQuickGO ontologyBLASTP
12003241200617294lipoprotein DLP12 prophageQuickGO ontologyBLASTP