Pre_GI Gene

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Host: NC_011080 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011080:2982346 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
29823462982690345hypothetical proteinBLASTP
29828722983789918periplasmic chelated iron-binding protein YfeAQuickGO ontologyBLASTP
29837862984607822chelated iron transport system membrane protein YfeBQuickGO ontologyBLASTP
29846042985464861chelated iron transport system membrane protein YfeCQuickGO ontologyBLASTP
29854552986303849chelated iron transport system membrane protein YfeDQuickGO ontologyBLASTP
29864422987245804BLASTP
29874722988227756transcriptional regulatorQuickGO ontologyBLASTP
29886112989498888transcriptional regulator AraC familyQuickGO ontologyBLASTP
29898432990205363putative cytoplasmic proteinQuickGO ontologyBLASTP
29902922990972681oxygen-regulated invasion protein OrgBQuickGO ontologyBLASTP
29909292991507579type III secretion apparatus protein OrgAMxiKQuickGO ontologyBLASTP
29915002992258759type III secretion apparatus lipoprotein YscJHrcJ familyQuickGO ontologyBLASTP
29922552992497243protein PrgJQuickGO ontologyBLASTP
29925792992821243type III secretion apparatus needle proteinQuickGO ontologyBLASTP
299284629939101065type III secretion apparatus protein PrgHEprHQuickGO ontologyBLASTP
29943402995269930transcriptional regulator HilDQuickGO ontologyBLASTP
299636029980211662transcriptional regulator HilAQuickGO ontologyBLASTP
29980392998521483cell invasion proteinQuickGO ontologyBLASTP
299857530001821608effector protein SptPQuickGO ontologyBLASTP
30001933000585393secretion chaparoneQuickGO ontologyBLASTP
30006123000836225hypothetical proteinBLASTP
30009163001164249acyl carrier proteinQuickGO ontologyBLASTP
300118330031952013cell invasion protein SipAQuickGO ontologyBLASTP
300325930042901032BLASTP
300436130055901230BLASTP
300561830073991782cell invasion protein SipBQuickGO ontologyBLASTP
30074023007899498type III secretion low calcium response chaperone LcrHSycDQuickGO ontologyBLASTP
300803730091071071surface presentation of antigens protein SpaSQuickGO ontologyBLASTP
30090943009885792type III secretion apparatus protein SpaRYscTHrcTQuickGO ontologyBLASTP
30098893010149261EpaQQuickGO ontologyBLASTP
30101753010849675type III secretion apparatus protein YscRHrcR familyQuickGO ontologyBLASTP
30108393011750912type III secretion apparatus protein YscQHrcQ familyQuickGO ontologyBLASTP
301175030127601011antigen presentation protein SpaNQuickGO ontologyBLASTP
30127603013203444surface presentation of antigens protein SpaMQuickGO ontologyBLASTP
301318130144761296flagellum-specific ATP synthaseQuickGO ontologyBLASTP
30144733014880408surface presentation of antigens protein SpaKQuickGO ontologyBLASTP
301490430169612058invasion protein InvAQuickGO ontologyBLASTP
301698630181041119invasion protein InvEQuickGO ontologyBLASTP
301810130196451545type III secretion outer membrane pore YscCHrcC familyQuickGO ontologyBLASTP
30197863020535750invasion proteinQuickGO ontologyBLASTP
30208923021335444cell adheranceinvasion proteinQuickGO ontologyBLASTP
30228213023012192putative cytoplasmic proteinQuickGO ontologyBLASTP
30238453024126282putative ABC-type transport systemQuickGO ontologyBLASTP
30241233024650528acetyltransferase gnat familyQuickGO ontologyBLASTP
30247233025160438probable transposase for transposonQuickGO ontologyBLASTP
30253663026022657serinethreonine-protein phosphatase 2QuickGO ontologyBLASTP
30261943026688495hypothetical proteinBLASTP
30267153027383669hypothetical proteinBLASTP
30282063028319114hypothetical proteinBLASTP
302852730310942568DNA mismatch repair protein MutSQuickGO ontologyBLASTP
30311503031530381putative cytoplasmic proteinQuickGO ontologyBLASTP
303152730327351209major facilitator family transporterQuickGO ontologyBLASTP
30328443033755912transcriptional regulator LysR familyQuickGO ontologyBLASTP
303379730352931497GntPQuickGO ontologyBLASTP
30352903036240951NAD-dependent epimerasedehydrataseShort-chain dehydrogenasereductase SDR3-beta hydroxysteroid dehydrogenaseisomerasedTDP-4-dehydrorhamnose reducQuickGO ontologyBLASTP