Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:2038303 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
203830320393971095prephenate dehydrataseQuickGO ontologyBLASTP
203948520405941110histidinol-phosphate aminotransferaseQuickGO ontologyBLASTP
2040591204283122413-phosphoshikimate 1-carboxyvinyltransferaseQuickGO ontologyBLASTP
20428282043493666cytidylate kinaseQuickGO ontologyBLASTP
20436412045323168330S ribosomal protein S1QuickGO ontologyBLASTP
20457352046022288integration host factor subunit betaQuickGO ontologyBLASTP
204624220477081467beta-lactamase domain-containing proteinQuickGO ontologyBLASTP
204773020490461317UDP-glucoseGDP-mannose dehydrogenaseQuickGO ontologyBLASTP
20491082050064957oxidoreductase domain-containing proteinQuickGO ontologyBLASTP
20500692050653585Serine acetyltransferase-like proteinQuickGO ontologyBLASTP
205065020517381089DegTDnrJEryC1StrS aminotransferaseQuickGO ontologyBLASTP
205177020535331764citrate transporterQuickGO ontologyBLASTP
20535692054195627adenylylsulfate kinaseQuickGO ontologyBLASTP
205419720554381242polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
20556832055952270hypothetical protein
20561022056938837hypothetical proteinBLASTP
205775420590551302transposase IS204IS1001IS1096IS1165 family proteinQuickGO ontologyBLASTP
20597702060648879glycosyl transferase family proteinQuickGO ontologyBLASTP
206065120618861236glycosyl transferase group 1QuickGO ontologyBLASTP
20618882062745858dTDP-4-dehydrorhamnose reductaseQuickGO ontologyBLASTP
20627802063547768hypothetical protein
206354720645571011polysaccharide biosynthesis protein CapDQuickGO ontologyBLASTP
206455020656771128UDP-N-acetylglucosamine 2-epimeraseQuickGO ontologyBLASTP
20656802066642963NAD-dependent epimerasedehydrataseQuickGO ontologyBLASTP
206663920676551017glycosyl transferase family proteinQuickGO ontologyBLASTP
20676522068239588hypothetical proteinBLASTP