Pre_GI: BLASTP Hits

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Query: NC_009439:2038303:2049108 Pseudomonas mendocina ymp, complete genome

Start: 2049108, End: 2050064, Length: 957

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020829:5174354:520252852025285203478951Pseudomonas denitrificans ATCC 13867, complete genomeUDP-2-acetamido-2-deoxy-d-glucuronic acid 3-dehydrogenase, WbpB1e-144512
NC_018691:1822731:183194218319421832889948Alcanivorax dieselolei B5 chromosome, complete genomeOxidoreductase family-like protein2e-143508
NC_008314:36500:398963989640846951Ralstonia eutropha H16 chromosome 2, complete sequencelipopolysaccharide biosynthesis protein6e-140496
NC_008782:3167440:318338431833843184367984Acidovorax sp. JS42, complete genomeoxidoreductase domain protein3e-137488
NC_014931:5088125:510963451096345110581948Variovorax paradoxus EPS chromosome, complete genomeoxidoreductase domain protein5e-137487
NC_002516:3519000:354274035427403543690951Pseudomonas aeruginosa PAO1, complete genomeprobable oxidoreductase WpbB1e-135482
NC_008781:3302934:332008133200813321028948Polaromonas naphthalenivorans CJ2, complete genomeoxidoreductase domain protein1e-134479
NC_008752:1025980:103626410362641037202939Acidovorax avenae subsp. citrulli AAC00-1, complete genomeoxidoreductase domain protein8e-135479
NC_012791:2052923:206131420613142062261948Variovorax paradoxus S110 chromosome 1, complete genomeoxidoreductase domain protein1e-133475
NC_015379:1887275:189904518990451899905861Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,oxidoreductase WpbB9e-129459
NC_007969:726086:731736731736732689954Psychrobacter cryohalolentis K5, complete genomeoxidoreductase-like7e-124443
NC_008700:2701500:272226627222662723222957Shewanella amazonensis SB2B, complete genomeMviM protein3e-101368
NC_014640:6745873:675509667550966756040945Achromobacter xylosoxidans A8 chromosome, complete genomeoxidoreductase family, NAD-binding Rossmann fold family protein5e-101367
NC_010814:1551624:158004915800491581005957Geobacter lovleyi SZ, complete genomeoxidoreductase domain protein1e-93343
NC_016603:3181592:318701731870173187967951Acinetobacter calcoaceticus PHEA-2 chromosome, complete genomehypothetical protein1e-92339
NC_009654:894492:908132908132909082951Marinomonas sp. MWYL1, complete genomeoxidoreductase domain-containing protein1e-92339
NC_009850:661802:671577671577672545969Arcobacter butzleri RM4018, complete genomeconserved hypothetical protein7e-91333
NC_009831:3583856:360047536004753601419945Shewanella sediminis HAW-EB3, complete genomeMviM protein1e-90333
NC_009802:1525144:155327315532731554238966Campylobacter concisus 13826, complete genomeputative uracil-DNA glycosylase superfamily1e-88327
NC_009663:89224:925669256693528963Sulfurovum sp. NBC37-1, complete genomeoxidoreductase2e-87322
NC_007912:1111093:112837611283761129332957Saccharophagus degradans 2-40, complete genomeregulatory protein, LacI5e-87321
NC_007575:1484305:148618114861811487149969Sulfurimonas denitrificans DSM 1251, complete genomeoxidoreductase-like7e-85313
NC_005835:259702:277143277143278075933Thermus thermophilus HB27, complete genomelipopolysaccaride biosynthesis protein wbpB9e-79293
NC_015703:4531578:4562746456274645637621017Runella slithyformis DSM 19594 chromosome, complete genomeoxidoreductase domain-containing protein1e-1584
NC_009615:3308538:3326849332684933278741026Parabacteroides distasonis ATCC 8503 chromosome, complete genomedehydrogenase2e-1273.2
NC_002939:3303989:331163233116323311826195Geobacter sulfurreducens PCA, complete genomehypothetical protein2e-1170.1
NC_012034:390273:3927253927253937681044Anaerocellum thermophilum DSM 6725, complete genomeoxidoreductase domain protein5e-1168.9
NC_014392:355443:3578633578633589061044Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeoxidoreductase domain protein6e-1168.6
NC_016642:757964:7735057735057747011197Pseudovibrio sp. FO-BEG1 chromosome, complete genomeoxidoreductase domain-containing protein2e-1066.6
NC_010729:1179008:1188515118851511895251011Porphyromonas gingivalis ATCC 33277, complete genomehypothetical protein2e-0963.5
NC_009328:2083386:2133778213377821348571080Geobacillus thermodenitrificans NG80-2 chromosome, complete genomedehydrogenases and related proteins4e-0962.4
NC_019902:626934:6332926332926343411050Thioalkalivibrio nitratireducens DSM 14787, complete genomeputative oxidoreductase7e-0961.6
NC_020995:751311:7683797683797693981020Enterococcus casseliflavus EC20, complete genomehypothetical protein1e-0860.8
NC_013171:1731491:1736217173621717372421026Anaerococcus prevotii DSM 20548, complete genomeoxidoreductase domain protein2e-0859.7
NC_016818:1291665:1292987129298712941621176Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative dehydrogenase4e-0859.3
NC_015947:1142206:1162252116225211633761125Burkholderia sp. JV3 chromosome, complete genomeoxidoreductase domain-containing protein5e-0858.9
NC_014121:598669:6138726138726150561185Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein6e-0858.5
NC_014210:4831858:4849236484923648503841149Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,oxidoreductase domain protein8e-0858.2
NC_013406:3672857:3701264370126437024241161Paenibacillus sp. Y412MC10 chromosome, complete genomeoxidoreductase domain-containing protein2e-0757
NC_014121:598669:6117766117766127951020Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein2e-0757
NC_011071:1178423:1198831119883111999551125Stenotrophomonas maltophilia R551-3, complete genomeoxidoreductase domain protein2e-0756.6
NC_014410:989698:9976909976909988501161Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,oxidoreductase domain protein2e-0756.6
NC_020389:1117509:113340511334051134355951Methanosarcina mazei Tuc01, complete genomemyo-inositol 2-dehydrogenase4e-0755.8
NC_016751:1524848:1526149152614915272221074Marinitoga piezophila KA3 chromosome, complete genomedehydrogenase4e-0755.8
NC_015061:1251905:1254189125418912553641176Rahnella sp. Y9602 chromosome, complete genomeoxidoreductase domain protein7e-0755.1
NC_017095:2143845:2148503214850321496091107Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeputative dehydrogenase1e-0654.3
NC_015555:1792242:1801285180128518024451161Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeoxidoreductase domain protein1e-0654.3
NC_014011:1760793:177588217758821776877996Aminobacterium colombiense DSM 12261 chromosome, complete genomeoxidoreductase domain protein2e-0653.9
NC_020054:2033982:2050325205032520514701146Fibrella aestuarina BUZ 2 drat genomeoxidoreductase domain protein1e-0653.9
NC_016609:8271000:8275608827560882766361029Niastella koreensis GR20-10 chromosome, complete genomeoxidoreductase domain-containing protein2e-0653.5
NC_010581:3133547:3155378315537831565591182Beijerinckia indica subsp. indica ATCC 9039, complete genomeoxidoreductase domain protein3e-0652.8
NC_006177:2883476:2887545288754528886301086Symbiobacterium thermophilum IAM 14863, complete genomeputative oxidoreductase4e-0652.8
NC_011653:1339868:1351863135186313529451083Thermosipho africanus TCF52B, complete genomelipopolysaccharide biosynthesis protein BplA5e-0652
NC_019970:929666:9386599386599398191161Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeputative dehydrogenase5e-0652