Pre_GI Gene

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Host: NC_007604 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007604:41495 Synechococcus elongatus PCC 7942, complete genome

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
4113141496366hypothetical proteinBLASTP
41495434771983hypothetical proteinBLASTP
43572449271356TPR repeatQuickGO ontologyBLASTP
45164465071344Methylase involved in ubiquinonemenaquinone biosynthesis-likeQuickGO ontologyBLASTP
46515488812367TPR repeatQuickGO ontologyBLASTP
4892749361435pilin polypeptide PilA-likeQuickGO ontologyBLASTP
4955049984435pilin polypeptide PilA-likeQuickGO ontologyBLASTP
50070526162547hypothetical proteinBLASTP
52606545071902TPR repeatQuickGO ontologyBLASTP
5451255030519hypothetical proteinBLASTP
55204563521149hypothetical proteinBLASTP
5642357190768hypothetical proteinBLASTP
5722357906684hypothetical protein
57941590681128perosamine synthetaseQuickGO ontologyBLASTP
59072603041233putative C-3 methyl transferaseQuickGO ontologyBLASTP
6030160846546dTDP-4-dehydrorhamnose 35-epimeraseQuickGO ontologyBLASTP
6086761112246hypothetical protein
6109161369279hypothetical protein
61366624721107CDP-glucose 46-dehydrataseQuickGO ontologyBLASTP
6246963242774glucose-1-phosphate cytidylyltransferaseQuickGO ontologyBLASTP
6426664706441dual specificity protein phosphataseQuickGO ontologyBLASTP
6470364870168hypothetical protein
6498765541555translation initiation factor IF-3QuickGO ontologyBLASTP
65658671721515hypothetical proteinBLASTP
6717767986810probable permease protein of ABC transporterQuickGO ontologyBLASTP
6799168980990ATPaseQuickGO ontologyBLASTP
6907969375297hypothetical protein
6937869938561hypothetical proteinBLASTP
69940711391200pleiotropic regulatory protein-likeQuickGO ontologyBLASTP
7130771960654hypothetical protein
72000731961197hydroxymethylbutenyl pyrophosphate reductaseQuickGO ontologyBLASTP
7330673659354hypothetical protein
73775750881314aminopeptidase PQuickGO ontologyBLASTP
7509175852762extracellular solute-binding protein family 3QuickGO ontologyBLASTP
7592876617690transcriptional regulator XRE familyQuickGO ontology
7661477063450hypothetical proteinBLASTP
7713877584447conserved hypothetical protein YCF41QuickGO ontologyBLASTP