Pre_GI: BLASTN Hits

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Query: NC_007604:41495 Synechococcus elongatus PCC 7942, complete genome

Start: 41495, End: 77599, Length: 36105

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006576:1551939*1551939158375331815Synechococcus elongatus PCC 6301, complete genome054010BLASTN svgBLASTP svg
NC_000911:35226335226339172939467Synechocystis sp. PCC 6803, complete genome3e-19105BLASTN svgBLASTP svg
NC_019757:47392064739206476216822963Cylindrospermum stagnale PCC 7417, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_007775:1153631*1153631117609922469Synechococcus sp. JA-3-3Ab, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_015942:11677851167785119371425930Acidithiobacillus ferrivorans SS3 chromosome, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_004547:16009001600900162975328854Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-0765.9BLASTN svgBLASTP svg