Pre_GI Gene

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Host: NC_007356 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007356:1165760 Dehalococcoides sp. CBDB1, complete genome

Host Lineage: Dehalococcoides mccartyi; Dehalococcoides; Dehalococcoidaceae; Dehalococcoidales; Chloroflexi; Bacteria

General Information: This strain was isolated from an enriched chlorobenzene-dechlorinatng mixed culture from anoxic river sediment. This organism was isolated from environments contaminated with organic chlorinated chemicals such as tetrachloroethene (PCE) and trichloroethane (TCE), common contaminants in the anaerobic subsurface. There are at least 15 organisms from different metabolic groups, halorespirators, acetogens, methanogens and facultative anaerobes, that are able to metabolize PCE. Some of these organisms couple dehalogenation to energy conservation and utilize PCE as the only source of energy while others dehalogenate tetrachloroethene fortuitously. This non-methanogenic, non-acetogenic culture is able to grow with hydrogen as the electron donor, indicating that hydrogen/PCE serves as an electron donor/acceptor for energy conservation and growth. This organism can only grow anaerobically in the presence of hydrogen as an electron donor and chlorinated compounds as electron acceptors. Dehalococcoides ethenogenes is typically found at sites contaminated with chlorinated solvents, and have been independently isolated in dozens of sites across the USA.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
11654881165839352sRNAQuickGO ontologyBLASTP
116576011674271668probable site-specific recombinaseQuickGO ontologyBLASTP
11676011168218618DNA invertaseresolvase family proteinQuickGO ontologyBLASTP
11682181168667450hypothetical proteinBLASTP
11689111169546636hypothetical proteinBLASTP
1170156117023176
117023211724392208hypothetical proteinBLASTP
11725171173272756hypothetical proteinBLASTP
11736561173934279transposase IS3IS911-family orfAQuickGO ontologyBLASTP
11739671174770804transposase orfBQuickGO ontologyBLASTP
117481411759291116methyltransferaseQuickGO ontologyBLASTP
11759291176696768hypothetical proteinBLASTP
11768831177155273putative reductive dehalogenase anchoring proteinQuickGO ontologyBLASTP
117717411786221449putative reductive dehalogenaseQuickGO ontologyBLASTP
117915011804661317sensor histidine kinaseQuickGO ontologyBLASTP
11804531181136684DNA-binding response regulatorQuickGO ontologyBLASTP
11816281182164537hypothetical proteinBLASTP
11821541182774621hypothetical proteinBLASTP
11828441183119276putative reductive dehalogenase anchoring proteinQuickGO ontologyBLASTP
118315211846691518putative reductive dehalogenaseQuickGO ontologyBLASTP
118497211862701299sensor histidine kinaseQuickGO ontologyBLASTP
11862791186950672DNA-binding response regulatorQuickGO ontologyBLASTP
11872861188050765hypothetical proteinBLASTP
11883771188688312hypothetical proteinBLASTP
11887441189172429hypothetical proteinBLASTP
11892271189520294putative reductive dehalogenase anchoring proteinQuickGO ontology
118952211911021581putative reductive dehalogenaseQuickGO ontologyBLASTP
11912221191335114hypothetical protein
11919341192389456hypothetical proteinBLASTP
11923941192969576hypothetical proteinBLASTP
11930441193313270putative reductive dehalogenase anchoring proteinQuickGO ontologyBLASTP
119334311947341392putative reductive dehalogenaseQuickGO ontologyBLASTP
11950211195560540transcriptional regulator MarR familyQuickGO ontologyBLASTP
11961861196395210hypothetical protein
11968481197519672DNA-binding response regulatorQuickGO ontologyBLASTP
119750611989181413sensor histidine kinaseQuickGO ontologyBLASTP
11999271200145219hypothetical protein
12002121200379168hypothetical protein
12004211200657237hypothetical protein
12012401201389150hypothetical proteinBLASTP
12031621204091930CRISPR-associated protein Cas1QuickGO ontologyBLASTP
12040911204720630putative CRISPR-associated proteinQuickGO ontologyBLASTP
12047451205362618hypothetical proteinBLASTP
120535912066421284hypothetical proteinBLASTP
12066351207168534hypothetical proteinBLASTP
120715812087891632hypothetical proteinBLASTP
120878212114752694putative CRISPR-associated helicase Cas3QuickGO ontologyBLASTP