Pre_GI Gene

Some Help

Host: NC_004547 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:1600900 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
160090016027351836putative outer membrane assembly proteinQuickGO ontologyBLASTP
160300016043521353anaerobic C4-dicarboxylate transporterQuickGO ontologyBLASTP
160443216060181587hypothetical proteinBLASTP
160671816078451128undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferaseQuickGO ontologyBLASTP
160796916091051137putative polysaccharide export proteinQuickGO ontologyBLASTP
16091141609548435probable protein-tyrosine-phosphataseQuickGO ontologyBLASTP
160956516117332169tyrosine-protein kinaseQuickGO ontologyBLASTP
161194116133741434undecaprenyl-phosphate galactosephosphotransferaseQuickGO ontologyBLASTP
16134981614457960CDP-6-deoxy-delta-34-glucoseen reductaseQuickGO ontologyBLASTP
16145521615325774glucose-1-phosphate cytidylyltransferaseQuickGO ontologyBLASTP
161531616164221107CDP-glucose 46-dehydrataseQuickGO ontologyBLASTP
161642216177351314CDP-4-keto-6-deoxy-D-glucose-3-dehydrataseQuickGO ontologyBLASTP
16179301618712783putative 24-dihydroxyhept-2-ene-17-dioic acid aldolaseQuickGO ontologyBLASTP
161872216205181797putative thiamine pyrophosphate enzymeQuickGO ontologyBLASTP
16205241621459936putative dTDP-glucose 46-dehydrataseQuickGO ontologyBLASTP
16214871622377891acetaldehyde dehydrogenaseQuickGO ontologyBLASTP
1622382162341310324-hydroxy-2-ketovalerate aldolaseQuickGO ontologyBLASTP
162341616244711056putative dTDP-glucose 4-6-dehydrataseQuickGO ontologyBLASTP
162470916260281320putative O-antigen transporterQuickGO ontologyBLASTP
16259911626770780putative glycosyl transferaseQuickGO ontologyBLASTP
16267671627393627putative acyl transferaseQuickGO ontologyBLASTP
162740916285541146putative glycosyl transferaseQuickGO ontologyBLASTP
162855116297531203putative O-antigen polymeraseQuickGO ontologyBLASTP