Pre_GI: BLASTP Hits

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Query: NC_016830:5031819:5040849 Pseudomonas fluorescens F113 chromosome, complete genome

Start: 5040849, End: 5041076, Length: 228

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants. Furthermore a number of strains also posses the ability to suppress agricultural pathogens like fungal infections, hence their role as biocontrol (biological disease control) agents is under examination. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:3849835:385660138566013856828228Pseudomonas syringae pv. tomato str. DC3000, complete genomeC4-type zinc finger protein, DksA/TraR family2e-25114
NC_017986:5509569:552613755261375526355219Pseudomonas putida ND6 chromosome, complete genomeC4-type zinc finger DksA/TraR family protein4e-1063.2
NC_002947:3404000:342163234216323421850219Pseudomonas putida KT2440, complete genomeC4-type zinc finger protein, DksA/TraR family5e-1063.2
NC_013956:3525711:354118635411863541413228Pantoea ananatis LMG 20103 chromosome, complete genomeCP803e-0960.5
NC_010694:614985:631610631610631906297Erwinia tasmaniensis, complete genomehypothetical protein6e-0856.2
NC_014837:2458780:247245224724522472676225Pantoea sp. At-9b chromosome, complete genomeTraR/DksA family transcriptional regulator9e-0855.5
NC_014837:3766426:378008137800813780308228Pantoea sp. At-9b chromosome, complete genomeTraR/DksA family transcriptional regulator2e-0754.7
NC_012917:3565268:357993435799343580158225Pectobacterium carotovorum subsp. carotovorum PC1, complete genometranscriptional regulator, TraR/DksA family4e-0650.4
NC_020418:3022891:303850130385013038722222Morganella morganii subsp. morganii KT, complete genomehypothetical protein4e-0650.1
NC_014972:2798670:280306728030672803276210Desulfobulbus propionicus DSM 2032 chromosome, complete genomephage/conjugal plasmid C-4 type zinc finger protein, TraR family4e-0650.1
NC_014841:248487:273296273296273562267Pantoea sp. At-9b plasmid pPAT9B04, complete sequencetranscriptional regulator, TraR/DksA family5e-0649.7
NC_020063:3104000:312248931224893122755267Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator, TraR/DksA family5e-0649.7
NC_015733:1943385:195578919557891955992204Pseudomonas putida S16 chromosome, complete genomeTraR/DksA family transcriptional regulator6e-0649.7
NC_015061:596247:614243614243614467225Rahnella sp. Y9602 chromosome, complete genomephage/conjugal plasmid C-4 type zinc finger protein, TraR family6e-0649.7
NC_013282:3389619:340304934030493403273225Cronobacter turicensis, complete genomeUncharacterized 8.5 kDa protein in gpA 5'region7e-0649.3